Factsheet for PGSC0003DMT400066737

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT4G34380.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT4G34380.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT4G34380.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT4G34380.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT4G34380.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	96.57	96.77
Bra037545.1-P	Field mustard	cytosol	52.15	65.32
CDX95477	Canola	cytosol	51.07	63.98
VIT_03s0063g01790.t01	Wine grape	cytosol	59.23	62.02
CDY18561	Canola	cytosol	55.36	55.84
PGSC0003DMT400039941	Potato	cytosol	48.71	55.77
Bra001728.1-P	Field mustard	nucleus	54.94	55.77
CDX82320	Canola	nucleus	54.94	55.77
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	56.22	55.39
PGSC0003DMT400016680	Potato	cytosol	53.0	55.38
PGSC0003DMT400008621	Potato	mitochondrion	51.07	55.35
CDY69149	Canola	cytosol	54.29	55.12
CDX99296	Canola	cytosol	53.86	55.04
CDX92289	Canola	cytosol	53.22	54.15
AT1G49450.1	Thale cress	nucleus	54.51	53.93
Bra022372.1-P	Field mustard	cytosol	52.79	53.71
PGSC0003DMT400059001	Potato	extracellular	52.36	53.16
CDY16499	Canola	nucleus	52.79	52.68
Bra014189.1-P	Field mustard	nucleus	52.79	52.68
CDX77246	Canola	nucleus	52.79	52.45
CDX69050	Canola	cytosol	53.22	52.43
PGSC0003DMT400026153	Potato	nucleus	50.86	51.52
CDX75426	Canola	cytosol	52.79	51.36
Bra011525.1-P	Field mustard	cytosol	52.79	51.36
Bra034622.1-P	Field mustard	cytosol	53.43	50.92
CDX76276	Canola	cytosol	53.43	50.92
CDY46256	Canola	cytosol	53.43	50.92
AT4G34380.1	Thale cress	cytosol	53.86	50.71
Bra017646.1-P	Field mustard	cytosol	51.07	48.67
CDY45305	Canola	cytosol	51.07	48.67
CDX72479	Canola	cytosol	50.64	48.26
CDX84804	Canola	nucleus	25.97	46.54
PGSC0003DMT400062862	Potato	cytosol	30.69	36.29
PGSC0003DMT400017340	Potato	plastid	31.12	35.28
PGSC0003DMT400004842	Potato	plastid	32.62	35.27
PGSC0003DMT400040333	Potato	cytosol	31.97	34.57
PGSC0003DMT400024834	Potato	cytosol	32.62	32.0
PGSC0003DMT400043704	Potato	plastid	29.61	31.65
PGSC0003DMT400068048	Potato	cytosol, plastid	29.83	30.68
KRH24543	Soybean	cytosol, nucleus	47.85	29.54

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CG37	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400025932
PGSC:PGSC0003DMG400025932	EnsemblPlants:PGSC0003DMT400066737	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029662BA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025932]

Coordinates

chr1:-:85376813..85378916

Molecular Weight (calculated)

51441.3 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.474

Length

466 amino acids

Sequence
(BLAST)

001: MTRKNNSMGA ILLQKESFRR TKFGTLLYSD PISDHEESSN NSARSSNASS APSPPRTSSF NGTNTTSNNN SPNYFMSPWN QSASPYVKSP WIHQPLLDSS
101: EESESSDCKN GLIGSLVREE GHIYSLAASG DLLYTGSDSK NIRVWKNLKE YSGFKCQSGL VKAIVVYGDK IFTGHQDGKI RVWKFLGKKR KAYKRVGSLP
201: TVRDYLKSSI NPKAYVEVRR NRNVPWIKHF DAVSCMSLDK ERGLLYSGSW DKTLKVWRLS DSKCLESINA HQDAINSVVV GFDGLVFTGS ADGTVKAWRR
301: ELVGNSAKHV LVETLLKQDS AVTSLAVNAA AATVYAGSSD GLVNFWERQK HFLEYGGALR GHKLAVLCVA VAGNLVLSGS ADKSICVWRR EEGSIHSCLT
401: VLTGHNGPVK CLTVEHDSNG SDSDSEDEAP MEKKSDKYWR VYSGSLDNSV KVWRLSENSF SGFEET

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.