Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77246 | Canola | nucleus | 85.35 | 85.71 |
| Bra014189.1-P | Field mustard | nucleus | 84.71 | 85.44 |
| CDY16499 | Canola | nucleus | 84.71 | 85.44 |
| AT3G18950.1 | Thale cress | cytosol, nucleus, plastid | 75.37 | 75.05 |
| AT1G47610.1 | Thale cress | cytosol | 45.44 | 60.97 |
| PGSC0003DMT400066737 | Potato | cytosol, mitochondrion | 53.93 | 54.51 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 53.72 | 54.41 |
| AT2G26490.1 | Thale cress | cytosol | 50.53 | 51.18 |
| AT4G34380.1 | Thale cress | cytosol | 51.59 | 49.09 |
| AT3G50390.1 | Thale cress | cytosol | 45.22 | 45.42 |
| AT3G51930.1 | Thale cress | cytosol, plastid | 32.7 | 37.11 |
| AT1G24130.1 | Thale cress | cytosol, plastid | 32.27 | 36.63 |
| AT1G24530.1 | Thale cress | cytosol, plastid | 31.0 | 34.93 |
| AT5G50120.1 | Thale cress | nucleus | 28.45 | 34.54 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:841369 | ProteinID:AAD43155.1 | ProteinID:AEE32431.1 | ArrayExpress:AT1G49450 |
| EnsemblPlantsGene:AT1G49450 | RefSeq:AT1G49450 | TAIR:AT1G49450 | RefSeq:AT1G49450-TAIR-G | EnsemblPlants:AT1G49450.1 | TAIR:AT1G49450.1 |
| Unigene:At.28389 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_175369.1 | PFAM:PF00400 | PFAM:PF11715 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0025022 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF145 |
| UniProt:Q9XIB2 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000009E28C | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
Coordinates
chr1:+:18305445..18307557
Molecular Weight (calculated)
52498.9 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.579
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.