Factsheet for AT3G18950.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037545.1-P	Field mustard	cytosol	74.0	94.09
CDX95477	Canola	cytosol	73.15	93.01
CDY18561	Canola	cytosol	88.79	90.91
Bra001728.1-P	Field mustard	nucleus	84.99	87.58
CDX82320	Canola	nucleus	84.57	87.15
CDY69149	Canola	cytosol	83.93	86.49
CDX99296	Canola	cytosol	83.3	86.4
CDX92289	Canola	cytosol	82.66	85.37
Bra022372.1-P	Field mustard	cytosol	82.45	85.15
AT1G49450.1	Thale cress	nucleus	75.05	75.37
AT1G47610.1	Thale cress	cytosol	43.55	58.69
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.39	56.22
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	55.18	56.13
AT4G34380.1	Thale cress	cytosol	53.49	51.11
AT2G26490.1	Thale cress	cytosol	49.89	50.75
AT3G50390.1	Thale cress	cytosol	44.82	45.2
AT1G24130.1	Thale cress	cytosol, plastid	32.77	37.35
AT3G51930.1	Thale cress	cytosol, plastid	31.5	35.9
AT1G24530.1	Thale cress	cytosol, plastid	31.08	35.17
AT5G50120.1	Thale cress	nucleus	28.75	35.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:821427	ProteinID:AEE76172.1	EMBL:AK117650	ArrayExpress:AT3G18950
EnsemblPlantsGene:AT3G18950	RefSeq:AT3G18950	TAIR:AT3G18950	RefSeq:AT3G18950-TAIR-G	EnsemblPlants:AT3G18950.1	TAIR:AT3G18950.1
Unigene:At.38474	ProteinID:BAB01691.1	EMBL:BT005434	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_188525.1
PFAM:PF00400	PO:PO:0000293	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	UniProt:Q9LJ71	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000000C653	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]

Coordinates

chr3:+:6536534..6538679

Molecular Weight (calculated)

52130.0 Da

IEP (calculated)

8.447

GRAVY (calculated)

-0.483

Length

473 amino acids

Sequence
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.