Factsheet for Bra022372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92289	Canola	cytosol	98.03	98.03
Bra037545.1-P	Field mustard	cytosol	73.36	90.32
Bra001728.1-P	Field mustard	nucleus	83.19	83.01
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	85.15	82.45
Bra014189.1-P	Field mustard	nucleus	73.58	72.16
Bra015611.1-P	Field mustard	cytosol	47.16	59.5
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	53.93	53.12
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	53.71	52.79
Bra034310.1-P	Field mustard	nucleus	50.22	51.22
Bra011525.1-P	Field mustard	cytosol	53.49	51.15
Bra007751.1-P	Field mustard	nucleus	48.91	49.78
Bra017646.1-P	Field mustard	cytosol	51.97	48.67
Bra034622.1-P	Field mustard	cytosol	51.31	48.06
Bra012903.1-P	Field mustard	cytosol	45.41	44.83
Bra036080.1-P	Field mustard	cytosol	44.98	44.69
Bra032795.1-P	Field mustard	cytosol	28.38	42.07
Bra024637.1-P	Field mustard	plastid	32.97	37.01
Bra006883.1-P	Field mustard	plastid	33.19	35.85
Bra033466.1-P	Field mustard	cytosol, plastid	32.97	35.61
Bra000611.1-P	Field mustard	nucleus	30.13	35.48
Bra012504.1-P	Field mustard	cytosol, mitochondrion	31.22	34.21
Bra010967.1-P	Field mustard	cytosol, plastid	31.22	33.89

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra022372	EnsemblPlants:Bra022372.1	EnsemblPlants:Bra022372.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E0S5	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547F86	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT3G18950 (E=3e-202) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:18110996..18112372

Molecular Weight (calculated)

50333.2 Da

IEP (calculated)

8.522

GRAVY (calculated)

-0.388

Length

458 amino acids

Sequence
(BLAST)

001: MVIAAAETSG THHRRPTFAA FLNTDEEEQS HATDVIDPTS TSVNNQQLQS YASTTSGESS PNQVPSPWNQ TYSPYYTDTT TTPTMSPSPW SQTYSPYYKS
101: PWIYQTTPNV DDDSDNGLVG TIVRQEGHVY SLAASGDLLF TGSDSKNVRV WKDLKDFAGF KSTSGSVKAI VITGNNRIFT GHQDGKIRIW RGSKKRTGVY
201: SRIGSLPSTK EFLTKSVNPK NYVQVRRHKN VLKIRHYDAV SCLSLNEELG LLYSGSWDKT LKVWRLSDSK CLESIQAHDD AVNTVAAGFD DLVFTGSADG
301: TLKVWKRELQ GKRTKHFLAN VLMKQENAVT ALAVNLTACV VYCGTSDGSV NFWEGKKYLS HGGILRGHRM AVLCLAAAGS LVLSGGADKN ICVWRRNGDG
401: THTCLSVLMD HVGPVKCLTA VEEAEKDGNE VRWIVYSGSL DKSVKVWRVT ETTPPVIG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.