Factsheet for Bra012504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51591	Canola	cytosol, mitochondrion	99.76	99.76
Bra032795.1-P	Field mustard	cytosol	67.94	91.91
Bra010967.1-P	Field mustard	cytosol, plastid	91.39	90.52
AT1G24530.1	Thale cress	cytosol, plastid	89.0	89.0
VIT_01s0137g00360.t01	Wine grape	cytosol	60.05	58.1
KRH43090	Soybean	plastid	59.09	57.31
Solyc05g013880.1.1	Tomato	cytosol, plastid	54.78	53.88
PGSC0003DMT400043704	Potato	plastid	54.55	52.29
GSMUA_Achr9P07610_001	Banana	nucleus	45.45	46.68
Bra024637.1-P	Field mustard	plastid	43.78	44.85
GSMUA_Achr3P17140_001	Banana	cytosol	47.37	44.59
Bra000611.1-P	Field mustard	nucleus	37.32	40.1
Bra037545.1-P	Field mustard	cytosol	33.73	37.9
Zm00001d025699_P001	Maize	plastid	40.67	37.61
Zm00001d003272_P001	Maize	cytosol, plastid	39.71	36.81
TraesCS2D01G338900.1	Wheat	plastid	38.76	36.65
Bra015611.1-P	Field mustard	cytosol	31.82	36.64
GSMUA_Achr8P28630_001	Banana	cytosol	44.74	36.38
TraesCS2A01G324000.1	Wheat	plastid	38.52	36.34
TraesCS2B01G358100.1	Wheat	plastid	38.52	36.02
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	38.52	35.86
KXG26570	Sorghum	cytosol, plastid	39.95	35.46
Bra006883.1-P	Field mustard	plastid	32.54	32.08
Bra033466.1-P	Field mustard	cytosol, plastid	31.82	31.37
Os04t0481600-00	Rice	cytosol	38.76	31.33
Bra022372.1-P	Field mustard	cytosol	34.21	31.22
Bra001728.1-P	Field mustard	nucleus	34.21	31.15
Bra014189.1-P	Field mustard	nucleus	34.45	30.84
Bra034310.1-P	Field mustard	nucleus	32.54	30.29
Bra007751.1-P	Field mustard	nucleus	32.54	30.22
Bra036080.1-P	Field mustard	cytosol	32.54	29.5
Bra012903.1-P	Field mustard	cytosol	31.58	28.45
Bra011525.1-P	Field mustard	cytosol	32.3	28.18
Bra034622.1-P	Field mustard	cytosol	32.54	27.81
Bra017646.1-P	Field mustard	cytosol	32.3	27.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra012504	EnsemblPlants:Bra012504.1	EnsemblPlants:Bra012504.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4D7P4	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002541233	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT1G24530 (E=9e-164) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:+:7131965..7133221

Molecular Weight (calculated)

45690.3 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.225

Length

418 amino acids

Sequence
(BLAST)

001: MRVMSWLDSS RRRRVQKSLK HLDSDDSATS SSLSEATGLS SLHSSLSLQT LPSVPSLQKI PSDTHAVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRA MCAHLDTFNG HDPFSGSVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVNNGFIYS VSWDKTLKIW RASDLRCKES VKAHDDAVNA VAVSANGTVY TGSADRRIRV WAKPDDSKRH ELVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERV DSSNYMAVSG ALRGHDKAIL SLFNVSDLLL SGSADRTGRI WRRGTDGCYS CLEVLSGHTK PVKSLAAVRD LESGGVVSIV SGSLDGEVKC
401: WKVSVSKPDN SIYKSLVL

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.