Factsheet for Bra034622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G34380.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G34380.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G34380.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G34380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76276	Canola	cytosol	99.8	99.8
CDY46256	Canola	cytosol	99.18	99.18
Bra011525.1-P	Field mustard	cytosol	81.19	82.88
AT4G34380.1	Thale cress	cytosol	81.19	80.2
Bra017646.1-P	Field mustard	cytosol	79.55	79.55
Bra037545.1-P	Field mustard	cytosol	47.24	62.1
VIT_03s0063g01790.t01	Wine grape	cytosol	52.35	57.53
Bra015611.1-P	Field mustard	cytosol	42.13	56.75
Bra034310.1-P	Field mustard	nucleus	49.9	54.34
Bra007751.1-P	Field mustard	nucleus	49.69	54.0
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	50.92	53.43
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	50.51	53.12
Bra001728.1-P	Field mustard	nucleus	49.28	52.51
Bra022372.1-P	Field mustard	cytosol	48.06	51.31
Bra014189.1-P	Field mustard	nucleus	48.26	50.54
Bra036080.1-P	Field mustard	cytosol	44.99	47.72
Bra012903.1-P	Field mustard	cytosol	43.56	45.91
Bra032795.1-P	Field mustard	cytosol	25.36	40.13
Bra024637.1-P	Field mustard	plastid	31.08	37.25
Bra000611.1-P	Field mustard	nucleus	27.81	34.96
Bra012504.1-P	Field mustard	cytosol, mitochondrion	27.81	32.54
Bra006883.1-P	Field mustard	plastid	28.02	32.31
Bra033466.1-P	Field mustard	cytosol, plastid	27.81	32.08
Bra010967.1-P	Field mustard	cytosol, plastid	27.61	31.99
KRH24543	Soybean	cytosol, nucleus	45.6	29.54

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra034622	EnsemblPlants:Bra034622.1	EnsemblPlants:Bra034622.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4F0M7	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025463A9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G34380 (E=1e-222) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:-:12456823..12458292

Molecular Weight (calculated)

53816.9 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.382

Length

489 amino acids

Sequence
(BLAST)

001: MRNETGGTMV VDLQTDSYNN NHNRHDLGDN GHKPRSKFGD ILKADHDGIF SPEDPIIVNT NLTHPRFSNV SASTMSSIGP ASGEGSPCVM SPWARMSTPW
101: PADFNEDNAL ETNGLIGSIV REEGHIYSLA ASGDLLYTGS DSKNIRVWKN LKDYTGFKAS SGLIKAIVIS VDRIFTGHQD GKIRVWKVSK KKAGKYKRVG
201: TLPTLKSMVK SSINPKHFNR NSVKKKHKDA VSSLSMDVEL GLLYSSSWDR TIKVWRVSDS KCLESIQAHD DAINSVMYGF DDLVFTGSAD GTVKVWKREM
301: HVKGTRHILV QVLLKQEHAV TALAVISKSS MVYSGSSDGV VNYWERSTRV FVGGVLKGHK SAVLCLTVAG NMLLSGSADK NICVWRREPS DGSHHCLTVL
401: TGHMGPVKCL AVEDEQACRG KEAEVCMVNE GDRKWIIYSG SLDKSVKVWR VTERMATWRE MDEPAASSGW ESSSSMREGS GAWSIGDLE

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.