Factsheet for Bra024637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16242	Canola	plastid	97.55	97.31
AT1G24130.1	Thale cress	cytosol, plastid	86.03	84.58
VIT_01s0026g00880.t01	Wine grape	cytosol	61.52	58.78
PGSC0003DMT400004842	Potato	plastid	57.35	54.29
PGSC0003DMT400040333	Potato	cytosol	57.11	54.06
KRH74694	Soybean	nucleus	57.35	54.04
Solyc05g006340.2.1	Tomato	cytosol	54.9	53.98
Solyc04g005020.2.1	Tomato	plastid	56.13	53.38
KRH69465	Soybean	nucleus	56.37	52.39
Bra000611.1-P	Field mustard	nucleus	49.02	51.41
Bra032795.1-P	Field mustard	cytosol	38.48	50.81
GSMUA_Achr6P36100_001	Banana	cytosol	45.83	47.58
HORVU7Hr1G039810.1	Barley	plastid	43.63	46.35
EES07284	Sorghum	cytosol	49.02	45.87
Os02t0740900-01	Rice	plastid	45.1	45.21
TraesCS7B01G100800.1	Wheat	cytosol	42.65	45.08
Zm00001d017994_P001	Maize	cytosol	38.97	44.66
Bra012504.1-P	Field mustard	cytosol, mitochondrion	44.85	43.78
Bra010967.1-P	Field mustard	cytosol, plastid	44.61	43.13
GSMUA_Achr7P19910_001	Banana	cytosol	46.08	42.73
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	41.67	42.61
Bra015611.1-P	Field mustard	cytosol	37.5	42.15
Bra037545.1-P	Field mustard	cytosol	38.24	41.94
TraesCS7A01G195200.1	Wheat	cytosol	43.38	35.54
Bra007751.1-P	Field mustard	nucleus	38.97	35.33
Bra034310.1-P	Field mustard	nucleus	38.73	35.19
TraesCS7D01G196700.1	Wheat	cytosol	42.4	34.81
Bra006883.1-P	Field mustard	plastid	36.03	34.67
Bra001728.1-P	Field mustard	nucleus	38.48	34.2
Bra033466.1-P	Field mustard	cytosol, plastid	35.54	34.2
Bra011525.1-P	Field mustard	cytosol	38.97	33.19
Bra022372.1-P	Field mustard	cytosol	37.01	32.97
Bra014189.1-P	Field mustard	nucleus	37.5	32.76
Bra036080.1-P	Field mustard	cytosol	36.52	32.32
Bra012903.1-P	Field mustard	cytosol	36.03	31.68
Bra017646.1-P	Field mustard	cytosol	37.25	31.08
Bra034622.1-P	Field mustard	cytosol	37.25	31.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra024637	EnsemblPlants:Bra024637.1	EnsemblPlants:Bra024637.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E782	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254219A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT1G24130 (E=1e-176) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:+:23886320..23887546

Molecular Weight (calculated)

44458.8 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.190

Length

408 amino acids

Sequence
(BLAST)

001: MSFFPCSCPL SCNKTRSECQ KKSTHHQSEP STSVSLLSQP SLPLVPSLSS PLQSSTVEHQ CLATLTDHSS YVSSLALSRK SLFTGSSNGD IRVWPREPPF
101: SSTGNIVAAG SGGVKSLVIL GDKLISAHQD HKIRVWKTID ETKYKCVATL PTMNDRFTSL FSQKSYVEVR RHKKSTWVNH VDAVSSLALS QDGSLLYSAS
201: WDRSFKIWRA SDFKCLESIE KAHDDAINAI VVSRDGFCYT GSGDKTIKVW RKKDKSHSLV ATLKKHLSAV NALAVSEDGK VLYSGACDRS ILVWERLSNG
301: DGDDEELHMT VVGALRGHTK AIMCLAVASD LVLSGSADKS LRVWRRGLLE KDGYSCLAVL EGHTKPVKCL AVSVSGSGSD SNSDYSCMVY SGSLDLSVKV
401: WNLRVSTV

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.