Factsheet for GSMUA_Achr6P36100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P19910_001	Banana	cytosol	69.47	62.05
Zm00001d017994_P001	Maize	cytosol	48.6	53.65
Os02t0740900-01	Rice	plastid	55.22	53.32
TraesCS7B01G100800.1	Wheat	cytosol	51.65	52.59
HORVU7Hr1G039810.1	Barley	plastid	51.15	52.34
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	51.15	50.38
EES07284	Sorghum	cytosol	55.22	49.77
KRH57017	Soybean	plastid	48.6	48.48
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	48.85	47.29
AT1G24130.1	Thale cress	cytosol, plastid	49.62	46.99
CDY16242	Canola	plastid	47.84	45.97
CDY14665	Canola	plastid	47.58	45.95
VIT_01s0026g00880.t01	Wine grape	cytosol	49.87	45.9
Bra024637.1-P	Field mustard	plastid	47.58	45.83
KRH63468	Soybean	plastid	48.09	45.22
KRH03365	Soybean	nucleus, plastid	46.56	45.07
CDY21432	Canola	cytosol, nucleus, plastid	44.27	44.85
Bra000611.1-P	Field mustard	nucleus	44.27	44.73
KRH54449	Soybean	plastid	47.84	44.66
KRH74694	Soybean	nucleus	49.11	44.57
PGSC0003DMT400004842	Potato	plastid	48.35	44.08
CDY70872	Canola	nucleus	43.0	43.9
Solyc05g006340.2.1	Tomato	cytosol	46.31	43.86
Solyc04g005020.2.1	Tomato	plastid	47.58	43.59
AT5G50120.1	Thale cress	nucleus	43.0	43.56
PGSC0003DMT400040333	Potato	cytosol	47.58	43.39
PGSC0003DMT400062862	Potato	cytosol	43.26	43.15
KRH69465	Soybean	nucleus	47.84	42.82
GSMUA_Achr9P07610_001	Banana	nucleus	44.02	42.51
TraesCS7A01G195200.1	Wheat	cytosol	52.16	41.16
TraesCS7D01G196700.1	Wheat	cytosol	51.65	40.85
GSMUA_Achr3P17140_001	Banana	cytosol	45.29	40.09
GSMUA_Achr3P30740_001	Banana	cytosol	32.82	36.86
Solyc03g113850.1.1	Tomato	cytosol, plastid	42.75	35.44
GSMUA_Achr8P28630_001	Banana	cytosol	43.77	33.46
GSMUA_Achr7P08190_001	Banana	cytosol	26.46	31.52
GSMUA_Achr11P...	Banana	cytosol	29.52	31.18
GSMUA_Achr9P26470_001	Banana	nucleus	31.81	30.19
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	28.5	30.03
GSMUA_Achr10P...	Banana	nucleus	32.32	27.02
GSMUA_AchrUn_...	Banana	nucleus	27.23	26.88
GSMUA_Achr2P17180_001	Banana	golgi	32.06	26.87
GSMUA_Achr6P20880_001	Banana	cytosol	26.72	26.79
GSMUA_Achr9P09670_001	Banana	plastid	24.43	26.09
GSMUA_Achr6P34640_001	Banana	plastid	24.94	24.94
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	31.04	24.5
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	31.3	19.22

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G36100_001	EnsemblPlants:GSMUA_Achr6P36100_001	EnsemblPlants:GSMUA_Achr6T36100_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TD53	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029566BF	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Putative Uncharacterized WD repeat-containing protein alr3466 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36100_001]

Coordinates

chr6:+:34149029..34150210

Molecular Weight (calculated)

42617.4 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.210

Length

393 amino acids

Sequence
(BLAST)

001: MGTAPRGSIP CNGNHDDDDC NHLPPKSLSL HYHSHPCLHH QCVTTIRAHA CYVAALAVHG TSVYSGGSDQ EIRVWPSVLL DSLSTARTDH PASFTVAQTE
101: SPVKSLLVSG DNLFSSHQDG EIRVWQINQR EQRSYKLKAV LPTSMDRFLS FLSPKNYVQV RRHKKCSWVH HVDAVSGLAL SHDGALLYSI SWDRTLKVWR
201: TSGFRCIESV AGAHQDAINA IAVSRNGHVY TGSADAKINV WRRSGEEGKH SLVQTLERHR SAVNALALSA DDRVLYSGAS DRSVVVWEGG SGGMAATGEL
301: RGHRRAILCL VAAGEVVCSG SADTTVRVWR RGREQKGRHC CLAVMEGHGG PVKSLAMVVL ESSSSSSSST CLVLSGGLDC DLKLWRLSVP SLS

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.