Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G039810.1 | Barley | plastid | 65.16 | 67.71 |
| TraesCS7B01G100800.1 | Wheat | cytosol | 65.16 | 67.36 |
| Os02t0740900-01 | Rice | plastid | 59.65 | 58.48 |
| TraesCS7D01G196700.1 | Wheat | cytosol | 64.91 | 52.11 |
| TraesCS7A01G195200.1 | Wheat | cytosol | 63.91 | 51.2 |
| GSMUA_Achr6P36100_001 | Banana | cytosol | 50.38 | 51.15 |
| GSMUA_Achr7P19910_001 | Banana | cytosol | 49.12 | 44.55 |
| KRH57017 | Soybean | plastid | 41.6 | 42.13 |
| VIT_17s0000g07690.t01 | Wine grape | nucleus, plastid | 42.61 | 41.87 |
| Bra024637.1-P | Field mustard | plastid | 42.61 | 41.67 |
| AT1G24130.1 | Thale cress | cytosol, plastid | 43.11 | 41.45 |
| CDY16242 | Canola | plastid | 42.36 | 41.32 |
| CDY14665 | Canola | plastid | 42.11 | 41.28 |
| VIT_01s0026g00880.t01 | Wine grape | cytosol | 43.11 | 40.28 |
| KRH03365 | Soybean | nucleus, plastid | 40.6 | 39.9 |
| CDY21432 | Canola | cytosol, nucleus, plastid | 38.6 | 39.69 |
| PGSC0003DMT400062862 | Potato | cytosol | 39.1 | 39.59 |
| Bra000611.1-P | Field mustard | nucleus | 38.6 | 39.59 |
| CDY70872 | Canola | nucleus | 37.84 | 39.22 |
| AT5G50120.1 | Thale cress | nucleus | 38.1 | 39.18 |
| KRH63468 | Soybean | plastid | 40.35 | 38.52 |
| Solyc05g006340.2.1 | Tomato | cytosol | 39.85 | 38.31 |
| Solyc04g005020.2.1 | Tomato | plastid | 41.1 | 38.23 |
| PGSC0003DMT400004842 | Potato | plastid | 41.1 | 38.05 |
| KRH74694 | Soybean | nucleus | 41.1 | 37.88 |
| PGSC0003DMT400040333 | Potato | cytosol | 40.1 | 37.12 |
| KRH54449 | Soybean | plastid | 39.1 | 37.05 |
| KRH69465 | Soybean | nucleus | 39.35 | 35.76 |
| Solyc03g113850.1.1 | Tomato | cytosol, plastid | 39.85 | 33.54 |
| Os04t0481600-00 | Rice | cytosol | 40.1 | 30.95 |
| Os01t0946100-02 | Rice | cytosol, plastid | 31.33 | 29.0 |
| Os03t0738700-01 | Rice | plasma membrane | 34.59 | 28.22 |
| Os03t0625300-00 | Rice | mitochondrion | 34.09 | 25.9 |
| Os01t0232200-00 | Rice | cytosol | 31.58 | 24.0 |
| Os12t0594000-00 | Rice | cytosol, peroxisome, plastid | 33.83 | 22.54 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:4340613 | UniProt:A0A0P0WUH4 | ProteinID:BAS96979.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EnsemblPlantsGene:Os06g0238700 | EnsemblPlants:Os06t0238700-00 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF321 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 |
| UniParc:UPI0003938A8A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | RefSeq:XP_015642500.1 |
| SEG:seg | : | : | : | : | : |
Description
OsWD40-127WD40 repeat domain containing protein. (Os06t0238700-00)
Coordinates
chr6:-:7211073..7212272
Molecular Weight (calculated)
41358.0 Da
IEP (calculated)
8.185
GRAVY (calculated)
0.064
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPNSEEGII SQTISSSSSS SCHYQCIATL SGNSSYVSGL AVDGDSLYVA SSDGHIRLWP LDMAMAMVRE ESTSSSSQGE VSRSTVAVTG SPVKCLAATG
101: DGLVSSHQDG TIRVWRHAGG RRRLALRAVL PTAADCLRAL LLPGGGYVEV RRHKRRAWVH HVDAVTALAL SPDGESMYSV SWDRSLKAWR LPGLRCAESV
201: AAAHDDAINA VVAAPDGHVY TASADGTVKA WRRRTGQKKL SLVCVMERHG AAVNALALGG GGRVLYSGAC DRSVVAWENS AGAGAGGADV RMVATATLRG
301: HARAVLCLAA DGDVVCSGSA DRTVRVWRRG ATAAYTCLAV LDGHGGAVKS LALARGGAGC DRCCACHVEE SSSCSCAALV CSGSLDCDVK LWRVTVSGL
101: DGLVSSHQDG TIRVWRHAGG RRRLALRAVL PTAADCLRAL LLPGGGYVEV RRHKRRAWVH HVDAVTALAL SPDGESMYSV SWDRSLKAWR LPGLRCAESV
201: AAAHDDAINA VVAAPDGHVY TASADGTVKA WRRRTGQKKL SLVCVMERHG AAVNALALGG GGRVLYSGAC DRSVVAWENS AGAGAGGADV RMVATATLRG
301: HARAVLCLAA DGDVVCSGSA DRTVRVWRRG ATAAYTCLAV LDGHGGAVKS LALARGGAGC DRCCACHVEE SSSCSCAALV CSGSLDCDVK LWRVTVSGL
001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI
Arabidopsis Description
F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.