Factsheet for AT1G24130.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024637.1-P	Field mustard	plastid	84.58	86.03
CDY16242	Canola	plastid	84.58	85.82
CDY14665	Canola	plastid	84.1	85.75
VIT_01s0026g00880.t01	Wine grape	cytosol	61.45	59.72
PGSC0003DMT400004842	Potato	plastid	58.07	55.92
Solyc05g006340.2.1	Tomato	cytosol	55.66	55.66
PGSC0003DMT400040333	Potato	cytosol	57.59	55.45
KRH74694	Soybean	nucleus	57.83	55.43
Solyc04g005020.2.1	Tomato	plastid	56.63	54.78
KRH69465	Soybean	nucleus	57.11	53.99
AT5G50120.1	Thale cress	nucleus	47.23	50.52
GSMUA_Achr6P36100_001	Banana	cytosol	46.99	49.62
Os02t0740900-01	Rice	plastid	45.3	46.19
HORVU7Hr1G039810.1	Barley	plastid	42.65	46.09
TraesCS7B01G100800.1	Wheat	cytosol	42.65	45.85
EES07284	Sorghum	cytosol	47.95	45.64
Zm00001d017994_P001	Maize	cytosol	38.31	44.66
GSMUA_Achr7P19910_001	Banana	cytosol	46.99	44.32
AT1G24530.1	Thale cress	cytosol, plastid	44.34	44.02
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	41.45	43.11
AT1G47610.1	Thale cress	cytosol	34.46	40.74
TraesCS7A01G195200.1	Wheat	cytosol	42.89	35.74
AT2G26490.1	Thale cress	cytosol	39.76	35.48
TraesCS7D01G196700.1	Wheat	cytosol	41.93	35.01
AT3G51930.1	Thale cress	cytosol, plastid	34.22	34.22
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	37.35	32.77
AT1G49450.1	Thale cress	nucleus	36.63	32.27
AT3G50390.1	Thale cress	cytosol	35.42	31.34
AT4G34380.1	Thale cress	cytosol	35.66	29.9

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:839025	ProteinID:AAC00598.1	ProteinID:AEE30481.1	ArrayExpress:AT1G24130
EnsemblPlantsGene:AT1G24130	RefSeq:AT1G24130	TAIR:AT1G24130	RefSeq:AT1G24130-TAIR-G	EnsemblPlants:AT1G24130.1	TAIR:AT1G24130.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_173823.1	UniProt:O48679	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00000A9D02	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]

Coordinates

chr1:-:8534146..8535660

Molecular Weight (calculated)

45799.4 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.290

Length

415 amino acids

Sequence
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.