CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16242	Canola	plastid	96.07	95.6
AT1G24130.1	Thale cress	cytosol, plastid	85.75	84.1
VIT_01s0026g00880.t01	Wine grape	cytosol	61.43	58.55
KRH74694	Soybean	nucleus	58.23	54.73
PGSC0003DMT400040333	Potato	cytosol	57.49	54.29
Solyc05g006340.2.1	Tomato	cytosol	55.28	54.22
PGSC0003DMT400004842	Potato	plastid	56.76	53.6
KRH69465	Soybean	nucleus	57.25	53.08
Solyc04g005020.2.1	Tomato	plastid	55.53	52.68
CDY21432	Canola	cytosol, nucleus, plastid	48.89	51.29
CDY70872	Canola	nucleus	46.93	49.61
GSMUA_Achr6P36100_001	Banana	cytosol	45.95	47.58
HORVU7Hr1G039810.1	Barley	plastid	43.73	46.35
EES07284	Sorghum	cytosol	48.89	45.64
Os02t0740900-01	Rice	plastid	45.21	45.21
TraesCS7B01G100800.1	Wheat	cytosol	42.75	45.08
Zm00001d017994_P001	Maize	cytosol	38.57	44.1
CDY03879	Canola	cytosol, mitochondrion	45.21	44.02
CDY51591	Canola	cytosol, mitochondrion	44.96	43.78
CDX84954	Canola	plastid	45.21	43.6
CDY24427	Canola	plastid	44.72	43.13
CDY36134	Canola	plastid	44.47	42.89
GSMUA_Achr7P19910_001	Banana	cytosol	45.95	42.5
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	41.28	42.11
CDY27587	Canola	plastid	44.96	42.07
CDY06729	Canola	cytosol	37.35	41.87
CDY70402	Canola	cytosol	37.1	41.71
CDX95477	Canola	cytosol	37.84	41.4
TraesCS7A01G195200.1	Wheat	cytosol	43.24	35.34
CDY48182	Canola	nucleus	38.57	34.97
CDX78047	Canola	plastid	35.63	34.69
TraesCS7D01G196700.1	Wheat	cytosol	42.26	34.61
CDX77053	Canola	cytosol	38.08	34.52
CDX73675	Canola	cytosol, mitochondrion, plastid	35.63	34.2
CDX99296	Canola	cytosol	38.08	33.99
CDY18561	Canola	cytosol	38.57	33.98
CDX76704	Canola	cytosol	38.82	33.98
CDY11480	Canola	cytosol	38.82	33.98
CDY23176	Canola	cytosol, plastid	35.38	33.96
CDX82320	Canola	nucleus	38.08	33.77
CDY69149	Canola	cytosol	37.59	33.33
CDX75426	Canola	cytosol	39.07	33.19
CDX69050	Canola	cytosol	38.08	32.77
CDX92289	Canola	cytosol	36.85	32.75
CDX77246	Canola	nucleus	37.59	32.62
CDY16499	Canola	nucleus	37.35	32.55
CDY02088	Canola	cytosol, mitochondrion, nucleus	35.87	32.16
CDY17780	Canola	cytosol	36.36	32.1
CDY23013	Canola	cytosol	35.87	32.09
CDY52834	Canola	cytosol	36.36	32.03
CDX76276	Canola	cytosol	37.35	31.08
CDY46256	Canola	cytosol	37.35	31.08
CDY45305	Canola	cytosol	37.1	30.88
CDX72479	Canola	cytosol	36.85	30.67
CDX84804	Canola	nucleus	14.25	22.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FJQ9	EnsemblPlants:CDY14665	ProteinID:CDY14665	ProteinID:CDY14665.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00084445001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDAE3C
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC05g19220DBnaC05g19220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJQ9]

Coordinates

chrLK032046:-:53670..54893

Molecular Weight (calculated)

44469.8 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.195

Length

407 amino acids

Sequence
(BLAST)

001: MSFFPCSCPL SCNKTRSECQ KKSTHHQSEP STSVSLLSQP SLPLVPSLSS PLQSSTVEHQ CLATLTDHSS YVSSLALSRK SLFTGSSNGD IRVWPREPPF
101: SSTGNIVSAG SGGVKSLVIL EDKLISAHQD HKIRVWKTNE DSNKYKCVAT LPTMNDRFTS LFSQKSYVEV RRHKKSTWVH HVDAVSSLAL SLDGSLLYSA
201: SWDRSFKIWR TSDFKCLESI EKAHDDAINA IVVSRDGFCY TGSGDKTIKV WNKKDKSHSL VATLKKHLSA VNALAISEDG KVLYSGACDR SILVWERLSN
301: GDDEELHMTV VGALRGHTKA IMCLVVASDL VLSGSADKSL RVWRRGLLEK DGYSCLAVLE GHTKPVKCLA VSVSGSGSDS NSDYSCMVYS GSLDLSVKVW
401: NVRVSAV

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.