CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51591	Canola	cytosol, mitochondrion	97.13	97.13
CDX84954	Canola	plastid	91.87	91.0
CDY36134	Canola	plastid	91.63	90.76
CDY24427	Canola	plastid	90.67	89.81
AT1G24530.1	Thale cress	cytosol, plastid	89.47	89.47
CDY27587	Canola	plastid	89.95	86.44
VIT_01s0137g00360.t01	Wine grape	cytosol	60.05	58.1
KRH43090	Soybean	plastid	59.33	57.54
Solyc05g013880.1.1	Tomato	cytosol, plastid	54.55	53.65
PGSC0003DMT400043704	Potato	plastid	54.31	52.06
GSMUA_Achr9P07610_001	Banana	nucleus	44.98	46.19
CDY14665	Canola	plastid	44.02	45.21
CDY16242	Canola	plastid	44.02	44.99
GSMUA_Achr3P17140_001	Banana	cytosol	46.65	43.92
CDY21432	Canola	cytosol, nucleus, plastid	38.04	40.98
CDY70872	Canola	nucleus	36.12	39.22
Zm00001d025699_P001	Maize	plastid	40.91	37.83
CDX95477	Canola	cytosol	33.25	37.37
Zm00001d003272_P001	Maize	cytosol, plastid	39.95	37.03
CDY06729	Canola	cytosol	32.06	36.91
CDY70402	Canola	cytosol	31.58	36.46
TraesCS2D01G338900.1	Wheat	plastid	38.52	36.43
GSMUA_Achr8P28630_001	Banana	cytosol	44.5	36.19
TraesCS2A01G324000.1	Wheat	plastid	38.28	36.12
TraesCS2B01G358100.1	Wheat	plastid	38.28	35.79
KXG26570	Sorghum	cytosol, plastid	40.19	35.67
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	38.28	35.63
CDX78047	Canola	plastid	33.01	33.01
CDX73675	Canola	cytosol, mitochondrion, plastid	32.78	32.31
CDY23176	Canola	cytosol, plastid	32.54	32.08
CDX92289	Canola	cytosol	34.69	31.66
CDX82320	Canola	nucleus	34.69	31.59
Os04t0481600-00	Rice	cytosol	39.0	31.53
CDY16499	Canola	nucleus	34.93	31.26
CDY69149	Canola	cytosol	34.21	31.15
CDX99296	Canola	cytosol	33.73	30.92
CDY18561	Canola	cytosol	33.97	30.74
CDY48182	Canola	nucleus	33.01	30.73
CDX77246	Canola	nucleus	34.45	30.7
CDX77053	Canola	cytosol	32.78	30.51
CDY11480	Canola	cytosol	33.25	29.89
CDX76704	Canola	cytosol	33.25	29.89
CDY17780	Canola	cytosol	32.3	29.28
CDY52834	Canola	cytosol	32.3	29.22
CDX75426	Canola	cytosol	33.01	28.81
CDY23013	Canola	cytosol	31.34	28.79
CDX69050	Canola	cytosol	32.54	28.75
CDY02088	Canola	cytosol, mitochondrion, nucleus	31.1	28.63
CDX76276	Canola	cytosol	32.78	28.02
CDY46256	Canola	cytosol	32.78	28.02
CDX72479	Canola	cytosol	32.54	27.81
CDY45305	Canola	cytosol	32.54	27.81
CDX84804	Canola	nucleus	12.44	20.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDY03879	ProteinID:CDY03879	ProteinID:CDY03879.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00117362001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF2E5C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC07g11040D

Coordinates

chrLK031947:-:560645..561901

Molecular Weight (calculated)

45755.3 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.222

Length

418 amino acids

Sequence
(BLAST)

001: MRVLSWLDSS RRRRVQKSLK HLDSDDSATS SSLSEVTGSS SLHSSLSLQT LPSVPSLQKI PSDAHAITVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRA MCAHLDTFNG QDPFSGSVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVNNGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA VAVSANGTVY TGSADRRIRV WAKPDDSKRH ELVATLEKHK SAVNALALND DGSFLFSGSC
301: DRSILVWERV DSSNYMAVSG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGADGCYS CLEVLSGHTK PVKSLAAVRD SESDGVVSIV SGSLDGEVKC
401: WKVSVSKPDN SIYKSIVL

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.