CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037545.1-P	Field mustard	cytosol	80.09	99.46
CDX95477	Canola	cytosol	78.79	97.85
CDX84804	Canola	nucleus	51.08	90.77
CDX99296	Canola	cytosol	88.53	89.69
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	90.91	88.79
CDX92289	Canola	cytosol	87.01	87.77
CDX82320	Canola	nucleus	86.58	87.15
CDY69149	Canola	cytosol	86.15	86.71
CDY16499	Canola	nucleus	74.03	73.23
CDX77246	Canola	nucleus	74.03	72.92
CDY06729	Canola	cytosol	47.84	60.88
CDY70402	Canola	cytosol	46.97	59.94
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.84	55.36
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	55.63	55.27
CDX77053	Canola	cytosol	51.3	52.78
CDY48182	Canola	nucleus	51.08	52.56
CDX69050	Canola	cytosol	53.03	51.8
CDX75426	Canola	cytosol	53.46	51.57
CDX76704	Canola	cytosol	50.22	49.89
CDY46256	Canola	cytosol	52.6	49.69
CDY11480	Canola	cytosol	50.0	49.68
CDX76276	Canola	cytosol	52.16	49.28
CDY45305	Canola	cytosol	51.95	49.08
CDX72479	Canola	cytosol	51.95	49.08
CDY02088	Canola	cytosol, mitochondrion, nucleus	45.02	45.81
CDY23013	Canola	cytosol	45.02	45.71
CDY17780	Canola	cytosol	44.81	44.9
CDY52834	Canola	cytosol	44.59	44.59
CDY16242	Canola	plastid	34.63	39.12
CDY14665	Canola	plastid	33.98	38.57
CDX78047	Canola	plastid	31.6	34.93
CDY21432	Canola	cytosol, nucleus, plastid	29.22	34.79
CDY23176	Canola	cytosol, plastid	31.82	34.67
CDX73675	Canola	cytosol, mitochondrion, plastid	31.82	34.67
CDY70872	Canola	nucleus	28.57	34.29
CDX84954	Canola	plastid	31.17	34.12
CDY03879	Canola	cytosol, mitochondrion	30.74	33.97
CDY51591	Canola	cytosol, mitochondrion	30.52	33.73
CDY24427	Canola	plastid	30.52	33.41
CDY36134	Canola	plastid	30.3	33.18
CDY27587	Canola	plastid	30.74	32.64

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FZX8	EnsemblPlants:CDY18561	ProteinID:CDY18561	ProteinID:CDY18561.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00005596001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF0E93	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA01g26340DBnaA01g26340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZX8]

Coordinates

chrLK032086:+:578860..580248

Molecular Weight (calculated)

50882.8 Da

IEP (calculated)

8.608

GRAVY (calculated)

-0.444

Length

462 amino acids

Sequence
(BLAST)

001: MVIDSETSGS HHRRLTFAAF LNTDLSADEE EEQSHGAADG INPSSTKNKN NQQRQSNAST TSGDSSPNQV RSPWNQTYSP YYTDTTTTPM MSPSPWNQTY
101: SPYYKSPWIY QSRNVDDDSD NGLIGTIVRQ EGHVYSLAAS GDLLFTGSDS KNIRVWKDLK DFAGFKSTSG LVKAIVITGD NRIFTGHQDG KIRVWRGSKR
201: RTGGYSRIGS LPTLKEFLTK SVNPKNYVEV RRRKNVLKIR HYDAVSCLSL NEELGLLYSG SWDKTLKVWR LSDSKCLESI QAHDDAINTV AAGFDDLLFT
301: GSADGTLKVW KRELQGRGTK HFLVNVLMKQ ESAMTALAVN LTALVVYCGS SDGTVNFWEG KKYLSHGGTL RGHRLAVLCL AAAGSLVLSG GADKNICVWR
401: RNGDGTHSCL SVLMDHVGPV KCLAAVEEVE EDGEGRWIVY SGSLDKSVKV WRVKETASSV IG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.