CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006883.1-P	Field mustard	plastid	98.58	98.58
CDX78047	Canola	plastid	97.17	98.56
CDY23176	Canola	cytosol, plastid	90.8	90.8
AT3G51930.1	Thale cress	cytosol, plastid	87.03	88.92
VIT_13s0019g01680.t01	Wine grape	plastid	62.03	66.25
PGSC0003DMT400017340	Potato	plastid	63.92	65.94
Solyc01g068250.2.1	Tomato	cytosol	64.39	65.62
KRH39863	Soybean	cytosol, plastid	62.74	63.94
GSMUA_Achr11P...	Banana	cytosol	53.07	60.48
Os01t0946100-02	Rice	cytosol, plastid	52.12	51.28
TraesCS3A01G485100.1	Wheat	plastid	50.24	51.2
KXG34097	Sorghum	plastid	51.65	50.0
HORVU3Hr1G106030.1	Barley	plastid	50.94	49.54
TraesCS3B01G532800.1	Wheat	cytosol, plastid	50.24	49.31
TraesCS3D01G480400.1	Wheat	plastid	49.76	49.3
Zm00001d042132_P001	Maize	plastid	44.34	46.77
CDY06729	Canola	cytosol	34.2	39.94
CDY70402	Canola	cytosol	33.96	39.78
CDX95477	Canola	cytosol	34.2	38.98
CDY48182	Canola	nucleus	37.74	35.63
CDY14665	Canola	plastid	34.2	35.63
CDX77053	Canola	cytosol	37.5	35.41
CDY16242	Canola	plastid	33.96	35.21
CDY21432	Canola	cytosol, nucleus, plastid	32.08	35.05
CDX76704	Canola	cytosol	37.97	34.62
CDY11480	Canola	cytosol	37.97	34.62
CDX99296	Canola	cytosol	36.08	33.55
CDX92289	Canola	cytosol	36.08	33.41
CDY70872	Canola	nucleus	30.19	33.25
CDX77246	Canola	nucleus	36.56	33.05
CDY16499	Canola	nucleus	36.32	32.98
CDY03879	Canola	cytosol, mitochondrion	32.31	32.78
CDY51591	Canola	cytosol, mitochondrion	31.84	32.3
CDX82320	Canola	nucleus	34.91	32.24
CDX84954	Canola	plastid	32.08	32.23
CDY17780	Canola	cytosol	34.91	32.1
CDY69149	Canola	cytosol	34.67	32.03
CDY52834	Canola	cytosol	34.67	31.82
CDY18561	Canola	cytosol	34.67	31.82
CDY36134	Canola	plastid	31.6	31.75
CDY02088	Canola	cytosol, mitochondrion, nucleus	33.73	31.5
CDY23013	Canola	cytosol	33.73	31.43
CDY24427	Canola	plastid	31.13	31.28
CDY27587	Canola	plastid	32.08	31.26
CDX69050	Canola	cytosol	32.78	29.39
CDX75426	Canola	cytosol	32.78	29.02
CDX76276	Canola	cytosol	32.55	28.22
CDY46256	Canola	cytosol	32.55	28.22
CDX72479	Canola	cytosol	32.31	28.02
CDY45305	Canola	cytosol	32.08	27.81
CDX84804	Canola	nucleus	13.68	22.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX73675	ProteinID:CDX73675	ProteinID:CDX73675.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109264001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF223	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EB3213	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g23280D

Coordinates

chrLK031799:-:2065874..2067148

Molecular Weight (calculated)

46145.0 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.270

Length

424 amino acids

Sequence
(BLAST)

001: MVRSIQKGGV LMMSSSSSST TTSNNGTDSD DSLSPSASSK SFVLTTLPPP ITGAYKPLAV LSAHVGSVSS LALCGDFLLS ASQGKDIIVW QQPDLKIFTK
101: FGQGDGSVKA LVSVGSKVFT AHQDSRIRVW KVSRRSSENA FRLVDSLPTT KDYLGKFMKQ SNYVQTRRNH KRLWIEHADS ISCLAVHAGI IYSGSWDKTL
201: KVWRLSDLKC LESIKAHDDA INGLVAGEGR VYSASADGKI KIWGKEKRKK ADSSLSSSSS SSWSHVLKAT LEGHAEVSVN SVVVSGEGRW VYGGGSDGFV
301: MGWERSEKGG DFEEWRLGFE TRGHKMAVLC MCVVGEMVCS GSADKSIGLW KREESGRLCK FGVIQGHEGP VKCLQASPNN VGAGFMLYSG SLDKSIRVWW
401: VSKQDCVEEE KKKTSFRTLL MQQG

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.