CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014189.1-P	Field mustard	nucleus	100.0	100.0
CDX77246	Canola	nucleus	95.72	95.31
AT1G49450.1	Thale cress	nucleus	85.44	84.71
CDX95477	Canola	cytosol	64.88	81.45
CDY18561	Canola	cytosol	73.23	74.03
CDX99296	Canola	cytosol	71.73	73.46
CDX82320	Canola	nucleus	72.16	73.42
CDX92289	Canola	cytosol	71.73	73.14
CDY69149	Canola	cytosol	70.88	72.11
CDX84804	Canola	nucleus	36.83	66.15
CDY06729	Canola	cytosol	46.25	59.5
CDY70402	Canola	cytosol	45.4	58.56
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	52.68	52.79
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	52.03	52.26
CDX69050	Canola	cytosol	52.25	51.59
CDX75426	Canola	cytosol	52.89	51.57
CDX77053	Canola	cytosol	49.04	51.0
CDY48182	Canola	nucleus	49.04	51.0
CDY45305	Canola	cytosol	51.39	49.08
CDY46256	Canola	cytosol	51.18	48.88
CDX72479	Canola	cytosol	50.96	48.67
CDX76704	Canola	cytosol	48.18	48.39
CDY11480	Canola	cytosol	48.18	48.39
CDX76276	Canola	cytosol	50.54	48.26
CDY02088	Canola	cytosol, mitochondrion, nucleus	44.33	45.59
CDY23013	Canola	cytosol	44.33	45.49
CDY17780	Canola	cytosol	44.54	45.12
CDY52834	Canola	cytosol	44.33	44.81
CDY16242	Canola	plastid	32.98	37.65
CDY14665	Canola	plastid	32.55	37.35
CDX78047	Canola	plastid	32.76	36.6
CDX73675	Canola	cytosol, mitochondrion, plastid	32.98	36.32
CDY23176	Canola	cytosol, plastid	32.33	35.61
CDX84954	Canola	plastid	32.12	35.55
CDY21432	Canola	cytosol, nucleus, plastid	29.12	35.05
CDY03879	Canola	cytosol, mitochondrion	31.26	34.93
CDY51591	Canola	cytosol, mitochondrion	30.84	34.45
CDY24427	Canola	plastid	31.05	34.36
CDY36134	Canola	plastid	30.84	34.12
CDY27587	Canola	plastid	31.69	34.02
CDY70872	Canola	nucleus	27.84	33.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FU47	EnsemblPlants:CDY16499	ProteinID:CDY16499	ProteinID:CDY16499.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00091097001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF11715	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254636D
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA08g02680DBnaA08g02680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU47]

Coordinates

chrLK032064:+:488208..489611

Molecular Weight (calculated)

52022.3 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.620

Length

467 amino acids

Sequence
(BLAST)

001: MAIQDNHSHN DHYRRLTFAS FLKSDSLSTG DEAYHTDGDH NHNDNKDAIS TNSDSQRPSN ASTSDSPIYP LSPWNQTYYP PNDNTTAFSS TNQSPWNQTC
101: SPYHKSPWIY QTRNSDFEDD PDNGLVGTIV RQEGHVYSLA ASGDLLFTGS DSKNVRVWKD LKDLSGFKST SGFVKAIVIT GDNRVFTGHQ DGKIRVWRGS
201: KRNPERYSRV GSLPTLKEFL TKSVNPKNYV ETRRKKNKLK IRHFDAVSCL TVNEDLGLLY SGSWDKTLKV WRLSDSKCLE SIEAHDDAVN TVVAGFDDLV
301: FTGSADGTLK VWKRELQGKE TKKHVLVHVL MKQESAVTAL AVNLNDAVVY CGSSDGSVNF WERKKYLTHG GTIHGHRMAV LCLTSAGSLL LSGGADNNIC
401: LWRRNGDGSH TCLSVLMDHD GPVKCLTAVE EAQDDVDDGD KADQRWIVYS GSLDKSVKVW RVTDYAS

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.