Factsheet for Bra014189.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16499	Canola	nucleus	100.0	100.0
AT1G49450.1	Thale cress	nucleus	85.44	84.71
Bra037545.1-P	Field mustard	cytosol	65.95	82.8
Bra022372.1-P	Field mustard	cytosol	72.16	73.58
Bra001728.1-P	Field mustard	nucleus	72.16	73.42
Bra015611.1-P	Field mustard	cytosol	46.47	59.78
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	52.68	52.79
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	52.03	52.26
Bra034310.1-P	Field mustard	nucleus	49.04	51.0
Bra011525.1-P	Field mustard	cytosol	52.25	50.94
Bra007751.1-P	Field mustard	nucleus	47.97	49.78
Bra017646.1-P	Field mustard	cytosol	51.18	48.88
Bra034622.1-P	Field mustard	cytosol	50.54	48.26
Bra036080.1-P	Field mustard	cytosol	44.33	44.9
Bra012903.1-P	Field mustard	cytosol	44.33	44.61
Bra032795.1-P	Field mustard	cytosol	27.84	42.07
Bra024637.1-P	Field mustard	plastid	32.76	37.5
Bra006883.1-P	Field mustard	plastid	32.76	36.08
Bra000611.1-P	Field mustard	nucleus	29.34	35.22
Bra033466.1-P	Field mustard	cytosol, plastid	31.69	34.91
Bra012504.1-P	Field mustard	cytosol, mitochondrion	30.84	34.45
Bra010967.1-P	Field mustard	cytosol, plastid	31.05	34.36

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra014189	EnsemblPlants:Bra014189.1	EnsemblPlants:Bra014189.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DCH5	PFAM:PF00400	PFAM:PF11715	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254636D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT1G49450 (E=7e-221) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:-:2687896..2689299

Molecular Weight (calculated)

52022.3 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.620

Length

467 amino acids

Sequence
(BLAST)

001: MAIQDNHSHN DHYRRLTFAS FLKSDSLSTG DEAYHTDGDH NHNDNKDAIS TNSDSQRPSN ASTSDSPIYP LSPWNQTYYP PNDNTTAFSS TNQSPWNQTC
101: SPYHKSPWIY QTRNSDFEDD PDNGLVGTIV RQEGHVYSLA ASGDLLFTGS DSKNVRVWKD LKDLSGFKST SGFVKAIVIT GDNRVFTGHQ DGKIRVWRGS
201: KRNPERYSRV GSLPTLKEFL TKSVNPKNYV ETRRKKNKLK IRHFDAVSCL TVNEDLGLLY SGSWDKTLKV WRLSDSKCLE SIEAHDDAVN TVVAGFDDLV
301: FTGSADGTLK VWKRELQGKE TKKHVLVHVL MKQESAVTAL AVNLNDAVVY CGSSDGSVNF WERKKYLTHG GTIHGHRMAV LCLTSAGSLL LSGGADNNIC
401: LWRRNGDGSH TCLSVLMDHD GPVKCLTAVE EAQDDVDDGD KADQRWIVYS GSLDKSVKVW RVTDYAS

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.