Factsheet for Bra015611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06729	Canola	cytosol	99.45	99.45
CDY70402	Canola	cytosol	97.25	97.51
AT1G47610.1	Thale cress	cytosol	85.95	88.89
Bra037545.1-P	Field mustard	cytosol	60.61	59.14
GSMUA_Achr3P30740_001	Banana	cytosol	53.72	55.71
Bra034310.1-P	Field mustard	nucleus	66.39	53.67
Bra007751.1-P	Field mustard	nucleus	65.56	52.89
Bra001728.1-P	Field mustard	nucleus	60.33	47.71
TraesCS5D01G389000.1	Wheat	cytosol	61.98	47.37
TraesCS5B01G382700.1	Wheat	cytosol	61.98	47.37
TraesCS5A01G379200.1	Wheat	cytosol	61.98	47.17
Bra022372.1-P	Field mustard	cytosol	59.5	47.16
HORVU5Hr1G093830.1	Barley	cytosol	61.98	46.97
Bra014189.1-P	Field mustard	nucleus	59.78	46.47
Os03t0738700-01	Rice	plasma membrane	61.43	45.6
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	60.61	45.27
Bra036080.1-P	Field mustard	cytosol	57.02	44.9
Bra011525.1-P	Field mustard	cytosol	57.85	43.84
Bra012903.1-P	Field mustard	cytosol	55.92	43.75
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	44.63	43.43
Bra017646.1-P	Field mustard	cytosol	57.3	42.54
Bra034622.1-P	Field mustard	cytosol	56.75	42.13
Bra032795.1-P	Field mustard	cytosol	34.99	41.1
GSMUA_Achr6P20880_001	Banana	cytosol	42.7	39.54
GSMUA_AchrUn_...	Banana	nucleus	43.25	39.45
Bra024637.1-P	Field mustard	plastid	42.15	37.5
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	49.31	35.94
Bra000611.1-P	Field mustard	nucleus	37.19	34.7
Bra033466.1-P	Field mustard	cytosol, plastid	39.94	34.2
Bra006883.1-P	Field mustard	plastid	39.94	34.2
Bra010967.1-P	Field mustard	cytosol, plastid	37.19	31.99
Bra012504.1-P	Field mustard	cytosol, mitochondrion	36.64	31.82
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	50.69	28.75

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra015611	EnsemblPlants:Bra015611.1	EnsemblPlants:Bra015611.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DGI6	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002544BB5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT1G47610 (E=3e-169) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA10:+:641520..642611

Molecular Weight (calculated)

40047.8 Da

IEP (calculated)

9.611

GRAVY (calculated)

-0.312

Length

363 amino acids

Sequence
(BLAST)

001: MPRSDRVREY SWNQSEENSL VGSIVQEEGH IYSLAATNDL VFTGSDNNHI RVWKNLNEFS EFKSNSGLVK AIVICREDNN NKVFTGHQDG KIRVWKTSHK
101: NPRVYTRAGS LPALKDVLKK SVKPSNYVEV RRRRTALWIK HSDAVSCLSL VEDQGLLYSA SWDRTVKVWR IHDLKCLESI KAHDDAVNSV VAAGSGEGLV
201: FTGSADGTVK VWKREVRGKR TAHSLVQTLL KQESAVTALV TSHVAVYSGS SDGAVNYWEM GEKKVLKHCG VFKKHRLAVL CLAAAGELVF SGAADKKICV
301: WRREGRVHSC VSVLTGHTGP VKCLAVAEPS GGEGEDGGDG RLIVYSGSLD KSVKVWRVPC HHM

Best Arabidopsis Sequence Match ( AT1G47610.1 )
(BLAST)

001: MPRSDLTRGY SDGDSLVGEI VREEGHIYSL AATNDLLYTG SDNNYIRVWK NLNEFSGFKS NSGLVKAIVI SREAKVFTGH QDGKIRVWKT SSKNPRVYTR
101: AGSLPALKDV LKSSVKPSNY VEVRRCRTAL WIKHSDAVSC LSLAEDQGLL YSASWDRTVK VWRIHDLKCI ESIKAHDDAV NSVTTAESLV FTGSADGTVK
201: VWKREIRGKR TAHSLFQTLL KQESAVTALV TSHMAVYSGS SDGAVNFWEM GDKKLLKHCE VFKKHRLAVL CIAAAGKLLF SGAADKKICV WRREGKVHTC
301: VSVLTGHTGP VKCLAVVEPS GGEEEDGGDG RLVLYSGSLD KSVKVWRVPR H

Arabidopsis Description

F16N3.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SX94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.