Factsheet for Bra034310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48182	Canola	nucleus	100.0	100.0
Bra007751.1-P	Field mustard	nucleus	90.87	90.67
AT2G26490.1	Thale cress	cytosol	91.31	88.17
VIT_18s0001g11600.t01	Wine grape	nucleus	70.38	69.3
Bra015611.1-P	Field mustard	cytosol	53.67	66.39
PGSC0003DMT400008621	Potato	mitochondrion	62.36	65.12
Solyc04g079700.2.1	Tomato	cytosol	63.92	64.64
Solyc12g088980.1.1	Tomato	cytosol	58.35	64.53
PGSC0003DMT400039941	Potato	cytosol	58.35	64.37
PGSC0003DMT400016680	Potato	cytosol	63.47	63.9
Solyc07g025140.2.1	Tomato	cytosol	62.36	63.35
KRH15278	Soybean	cytosol	50.33	62.09
KRH05757	Soybean	nucleus	64.37	62.02
Bra037545.1-P	Field mustard	cytosol	51.22	61.83
GSMUA_Achr3P30740_001	Banana	cytosol	42.98	55.14
TraesCS5B01G382700.1	Wheat	cytosol	57.68	54.53
TraesCS5D01G389000.1	Wheat	cytosol	57.68	54.53
TraesCS5A01G379200.1	Wheat	cytosol	57.91	54.51
HORVU5Hr1G093830.1	Barley	cytosol	58.13	54.49
Os03t0738700-01	Rice	plasma membrane	58.57	53.78
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	58.13	53.7
Bra001728.1-P	Field mustard	nucleus	51.45	50.33
Bra022372.1-P	Field mustard	cytosol	51.22	50.22
Bra034622.1-P	Field mustard	cytosol	54.34	49.9
Bra017646.1-P	Field mustard	cytosol	54.34	49.9
Bra011525.1-P	Field mustard	cytosol	53.23	49.9
Bra014189.1-P	Field mustard	nucleus	51.0	49.04
Bra012903.1-P	Field mustard	cytosol	50.33	48.71
Bra036080.1-P	Field mustard	cytosol	49.89	48.59
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	40.31	48.53
GSMUA_Achr6P20880_001	Banana	cytosol	40.09	45.92
GSMUA_AchrUn_...	Banana	nucleus	38.31	43.22
Bra032795.1-P	Field mustard	cytosol	28.73	41.75
Bra024637.1-P	Field mustard	plastid	35.19	38.73
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	42.32	38.15
Bra006883.1-P	Field mustard	plastid	35.41	37.5
Bra033466.1-P	Field mustard	cytosol, plastid	34.74	36.79
Bra000611.1-P	Field mustard	nucleus	31.63	36.5
Bra012504.1-P	Field mustard	cytosol, mitochondrion	30.29	32.54
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	46.1	32.34
Bra010967.1-P	Field mustard	cytosol, plastid	30.07	31.99

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra034310	EnsemblPlants:Bra034310.1	EnsemblPlants:Bra034310.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4EZR7	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025452BF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT2G26490 (E=9e-234) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA04:+:11819842..11821191

Molecular Weight (calculated)

49210.1 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.389

Length

449 amino acids

Sequence
(BLAST)

001: MMHSDPNLSS TMTDQTEDEY GLRNSSASAV GTGMYGRMSC EGSPVMMSPW NQASPFTQTE WSNVDENLPQ NGLIGSLVRE EGHIYSLAAT KDLLYTGSDS
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSSHKRSGTL PTLKDIFKAS LKPSNYVEVK KNRTALWIKH ADAVSCLSLN
201: EEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQQGKHTKH TLMQTLTKQE TAITALAVNK NGTAVYFGSS
301: DGLVNFWERD EKQLNYGGVL KGHKLAVLCL EVAGGLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK CLAVEENLEV SEQKDHKWIV YSGSLDKSVK
401: VWGVSESFID MNNMGTMQQE QHVISHSEVV MSDGSFSSST GGASSHQRG

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.