Factsheet for Bra033466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23176	Canola	cytosol, plastid	97.64	97.64
Bra006883.1-P	Field mustard	plastid	90.57	90.57
AT3G51930.1	Thale cress	cytosol, plastid	87.97	89.88
VIT_13s0019g01680.t01	Wine grape	plastid	61.79	66.0
KRH39863	Soybean	cytosol, plastid	63.92	65.14
PGSC0003DMT400017340	Potato	plastid	62.74	64.72
Solyc01g068250.2.1	Tomato	cytosol	62.97	64.18
GSMUA_Achr11P...	Banana	cytosol	53.3	60.75
Os01t0946100-02	Rice	cytosol, plastid	53.07	52.2
TraesCS3A01G485100.1	Wheat	plastid	50.94	51.92
TraesCS3D01G480400.1	Wheat	plastid	50.71	50.23
TraesCS3B01G532800.1	Wheat	cytosol, plastid	51.18	50.23
HORVU3Hr1G106030.1	Barley	plastid	51.65	50.23
KXG34097	Sorghum	plastid	51.65	50.0
Zm00001d042132_P001	Maize	plastid	44.34	46.77
Bra015611.1-P	Field mustard	cytosol	34.2	39.94
Bra032795.1-P	Field mustard	cytosol	29.01	39.81
Bra037545.1-P	Field mustard	cytosol	33.73	38.44
Bra024637.1-P	Field mustard	plastid	34.2	35.54
Bra000611.1-P	Field mustard	nucleus	32.31	35.22
Bra007751.1-P	Field mustard	nucleus	37.03	34.89
Bra034310.1-P	Field mustard	nucleus	36.79	34.74
Bra022372.1-P	Field mustard	cytosol	35.61	32.97
Bra012504.1-P	Field mustard	cytosol, mitochondrion	31.37	31.82
Bra010967.1-P	Field mustard	cytosol, plastid	31.6	31.75
Bra014189.1-P	Field mustard	nucleus	34.91	31.69
Bra001728.1-P	Field mustard	nucleus	34.2	31.59
Bra036080.1-P	Field mustard	cytosol	33.73	31.02
Bra012903.1-P	Field mustard	cytosol	33.49	30.6
Bra011525.1-P	Field mustard	cytosol	32.31	28.6
Bra017646.1-P	Field mustard	cytosol	32.78	28.43
Bra034622.1-P	Field mustard	cytosol	32.08	27.81

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra033466	EnsemblPlants:Bra033466.1	EnsemblPlants:Bra033466.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EXC9
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002543865	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT3G51930 (E=3e-190) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA04:-:4355559..4356833

Molecular Weight (calculated)

46092.0 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.270

Length

424 amino acids

Sequence
(BLAST)

001: MVRSIQEGDL MTSSPSSSST TTSNGTDSDG SLSPSSSSKS FVLSALTPFI TAAYKPLAVL SAHVGSVSSL ALCGEFLLSA SQGKDIIVWQ QPDLKIFAKF
101: GQGDGSVKAL VSVGSKVFTA HQDSRIRVWK VSRRSSENAF RLVDTLPTTK DYLGKFMKQS NYVQTRRNHK RLWIEHSDSI SCLAVHAGII YSGSWDKTLK
201: VWRLSDLKCL ESIKAHDDAI NGLFVGEGRV YSASADGKIK IWGKEKRKQT GSSLSSHSSS SSCSHVLKAT LEGRAEVSVN SVVVSGDGKW VYGGGSDGFV
301: MGWEKREKGG DFEEWELGFE MRGHKMAVLC MCLVGEMVCS GSADKSIGLW KREGSGKLCK VGVIQGHEGP VKCLQASPNN VGAGFMLYSG GLDKSIRVWW
401: VPKQDNLEEE KKKTSFKTLL MQQE

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.