Factsheet for GSMUA_Achr11P05980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g01680.t01	Wine grape	plastid	64.78	60.71
PGSC0003DMT400017340	Potato	plastid	63.98	57.91
KRH39863	Soybean	cytosol, plastid	62.63	56.01
Solyc01g068250.2.1	Tomato	cytosol	62.63	56.01
AT3G51930.1	Thale cress	cytosol, plastid	61.02	54.7
CDX78047	Canola	plastid	60.75	54.07
CDY23176	Canola	cytosol, plastid	61.29	53.77
Bra033466.1-P	Field mustard	cytosol, plastid	60.75	53.3
Bra006883.1-P	Field mustard	plastid	60.48	53.07
CDX73675	Canola	cytosol, mitochondrion, plastid	60.48	53.07
TraesCS3A01G485100.1	Wheat	plastid	54.57	48.8
Os01t0946100-02	Rice	cytosol, plastid	56.45	48.72
TraesCS3D01G480400.1	Wheat	plastid	53.76	46.73
HORVU3Hr1G106030.1	Barley	plastid	54.57	46.56
TraesCS3B01G532800.1	Wheat	cytosol, plastid	53.76	46.3
KXG34097	Sorghum	plastid	54.3	46.12
Zm00001d042132_P001	Maize	plastid	48.92	45.27
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	31.72	31.64
GSMUA_Achr3P30740_001	Banana	cytosol	29.57	31.43
GSMUA_Achr7P08190_001	Banana	cytosol	27.15	30.61
GSMUA_Achr6P36100_001	Banana	cytosol	31.18	29.52
GSMUA_Achr9P09670_001	Banana	plastid	27.96	28.26
GSMUA_Achr6P20880_001	Banana	cytosol	29.57	28.06
GSMUA_Achr9P26470_001	Banana	nucleus	30.91	27.78
GSMUA_Achr6P34640_001	Banana	plastid	28.76	27.23
GSMUA_Achr9P07610_001	Banana	nucleus	29.3	26.78
GSMUA_AchrUn_...	Banana	nucleus	28.49	26.63
GSMUA_Achr7P19910_001	Banana	cytosol	30.38	25.68
GSMUA_Achr2P17180_001	Banana	golgi	30.91	24.52
GSMUA_Achr3P17140_001	Banana	cytosol	28.76	24.1
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	30.11	22.49
GSMUA_Achr10P...	Banana	nucleus	27.96	22.13
GSMUA_Achr8P28630_001	Banana	cytosol	29.3	21.21
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	32.8	19.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr11G05980_001	EnsemblPlants:GSMUA_Achr11P05980_001	EnsemblPlants:GSMUA_Achr11T05980_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0RPS8	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF223	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002955F7E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative Uncharacterized WD repeat-containing protein all2124 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05980_001]

Coordinates

chr11:+:4467768..4468958

Molecular Weight (calculated)

39761.5 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.180

Length

372 amino acids

Sequence
(BLAST)

001: MLTPLLEKSK SNRSSSDSQN IPTPTPPQVH HCIPCAGSGA GRHKSLAVLS GHVGSVSCLA LCGEFVLSAS HGKDIIVWQQ PDLRRFARFG HGSGSVKALV
101: TVGSRIFSGH QDGRIRVWKV SRGSENIFRL TATLPTTKDY LGRISCLAVD GGFVYSGSWD KTLKVWRVSD LKCLESIRAH DDAINGLVAH RGALYSASAD
201: GKIKIWAKEK SSHRLKGVLE GHKDVSWNSV VVVCEDGRLA YGGGSDGRIM GWQGGEGGGN WKLVCDVRAH EMSVLCLCAA GEFLCSGSAD KSIGVWRRRG
301: GGGLCRVGII GGHEAPVKCL QASAHSVGEG FMLYSGGLDR SLRVWWVSRE QGEVKKVEGN NGGAEEALDK LS

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.