Factsheet for GSMUA_Achr9P26470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09670_001	Banana	plastid	63.04	70.92
GSMUA_Achr6P34640_001	Banana	plastid	60.63	63.87
GSMUA_Achr7P08190_001	Banana	cytosol	42.51	53.33
GSMUA_Achr3P30740_001	Banana	cytosol	42.75	50.57
TraesCS5D01G074900.1	Wheat	cytosol	52.66	48.44
TraesCS4A01G242800.1	Wheat	plastid	54.35	48.28
TraesCS5B01G068600.1	Wheat	cytosol	52.42	48.22
TraesCS5A01G063900.1	Wheat	cytosol	52.42	48.12
TraesCS4B01G072300.1	Wheat	plastid	54.35	47.57
TraesCS4D01G071100.1	Wheat	plastid	54.35	47.37
TraesCS4B01G072200.1	Wheat	plastid	54.83	47.29
TraesCS4A01G242900.1	Wheat	plastid	54.35	46.39
TraesCS4D01G071000.1	Wheat	plastid	53.86	46.07
GSMUA_Achr2P17180_001	Banana	golgi	52.17	46.06
TraesCS4B01G072100.1	Wheat	plastid	53.14	45.36
HORVU4Hr1G012000.11	Barley	plastid	51.93	44.79
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	40.1	44.5
Zm00001d033304_P001	Maize	mitochondrion, plastid	51.21	44.07
OQU91330	Sorghum	mitochondrion	51.21	42.74
Zm00001d041381_P001	Maize	cytosol, mitochondrion	47.58	41.74
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	50.24	41.03
GSMUA_Achr6P20880_001	Banana	cytosol	38.16	40.31
GSMUA_AchrUn_...	Banana	nucleus	37.2	38.69
HORVU5Hr1G017260.1	Barley	plastid	45.65	35.66
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	51.45	35.56
Os03t0625300-00	Rice	mitochondrion	44.44	35.05
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	40.58	33.73
GSMUA_Achr6P36100_001	Banana	cytosol	30.19	31.81
GSMUA_Achr11P...	Banana	cytosol	27.78	30.91
GSMUA_Achr7P19910_001	Banana	cytosol	30.68	28.86
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	43.24	27.97
GSMUA_Achr9P07610_001	Banana	nucleus	26.09	26.54
GSMUA_Achr10P...	Banana	nucleus	29.71	26.17
GSMUA_Achr3P17140_001	Banana	cytosol	27.29	25.45
GSMUA_Achr8P28630_001	Banana	cytosol	25.85	20.82

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr9G26470_001	EnsemblPlants:GSMUA_Achr9P26470_001	EnsemblPlants:GSMUA_Achr9T26470_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0U3Q4	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294A446	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative F-box/WD repeat-containing protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26470_001]

Coordinates

chr9:-:30892904..30894382

Molecular Weight (calculated)

44180.9 Da

IEP (calculated)

7.567

GRAVY (calculated)

-0.284

Length

414 amino acids

Sequence
(BLAST)

001: MTDREDGTAS PPRNSNLLGY DSDCNSASAR SSPYDLSPWN SAAASPFAKS PWAYLPVLSD DAADPDATGL VGSLVREEGH VYSLATAGDL LYTGSDSRNI
101: RVWKGQHELS GFKSCSGLVK AIVVAGDTIF TGHQDGKIRV WKTFAKNPVV HKRVGTLPKL KDFLKSSVNP SNYVQVRRHR KTVWLRHFDA ISCLSLDEEA
201: GILYSGSWDR TVKVWRVSDS KCLESIKAHD DAVNAVATGF GGFLFTGSAE GTVKVWHREA AGKVGATKHV LVQRLLQQES AVTSVAVAEV AGVVGSADKT
301: LCVWRREEGD GSVGGPGHTK LAVLAGHEGP IKCLVVEKED GEAGGACGCP RYVVYSGSLD NSVKVWRVPE QGATPSPPRA RRVEAQPPQS ESEGAKLMEL
401: GSHVGQDFSV PAAA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.