CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G068600.1	Wheat	cytosol	65.09	73.33
TraesCS5A01G063900.1	Wheat	cytosol	64.89	72.95
TraesCS5D01G074900.1	Wheat	cytosol	64.5	72.67
Zm00001d041381_P001	Maize	cytosol, mitochondrion	67.46	72.46
OQU91330	Sorghum	mitochondrion	55.62	56.85
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	65.88	55.76
GSMUA_Achr7P08190_001	Banana	cytosol	34.71	53.33
GSMUA_Achr9P26470_001	Banana	nucleus	41.03	50.24
HORVU5Hr1G017260.1	Barley	plastid	50.49	48.3
GSMUA_Achr9P09670_001	Banana	plastid	34.12	47.01
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	43.0	44.86
GSMUA_Achr6P34640_001	Banana	plastid	34.12	44.02
GSMUA_Achr2P17180_001	Banana	golgi	40.04	43.28
KXG34097	Sorghum	plastid	27.61	31.96
EES07284	Sorghum	cytosol	25.44	29.59
KXG26570	Sorghum	cytosol, plastid	25.84	27.81
EES02188	Sorghum	cytosol	27.02	25.46

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1Z5R6U4	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU79483	ProteinID:OQU79483
ProteinID:OQU79483.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF323	SMART:SM00320	EnsemblPlantsGene:SORBI_3008G150400	SUPFAM:SSF50978	UniParc:UPI000B8BABC6	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:58354366..58356082

Molecular Weight (calculated)

54125.1 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.510

Length

507 amino acids

Sequence
(BLAST)

001: MGNHKKLLQF LRPDPAVAAA PATKSSSSTT SDDEEDDDYS YYGDNDNTSC STPTTTASAS TAASPYASSP WTQLPGLMSP RSGPADDATS RRRTGLLGSL
101: VKEGGGHVYS LAAAGDLLYT GTDSRNVRVW RDRRELGGGF KSGSGLVKAI VVVAADGGRI YTGHQDGKVR VWRRRASSSE KKGEEDDPAV EHQRVGSLPR
201: FRDVLRSSLR PSQYVQTRRR HSGLWMRHFD AVSSLSLDAA AGLIYSASWD RTFKVWRVSD SKCLESVYAH TDAVNAVAAV GFDALVLTGS ADGTVKVWRR
301: GAKANGNKKK KKKGRRDDGD TWHTMERVLR EGDSAVTAIA VAVEARVWRR GAGPGAAPRN GGALWGHKMA VLCLAVAGGR VVVSGSADRT INVWRREEGA
401: DHARLAVLTG HTGPVKCVAM DQEVDEDDAD GPRRWVVYSG SLDGSVKVWR VSDSGGGGGG IATPDLTTTS AATPTRYSWK GSSPSPLRSW TPYAAAATPE
501: PRHMGAA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.