CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042132_P001	Maize	plastid	77.4	84.33
Os01t0946100-02	Rice	cytosol, plastid	74.43	75.64
TraesCS3A01G485100.1	Wheat	plastid	68.26	71.88
TraesCS3D01G480400.1	Wheat	plastid	70.09	71.73
TraesCS3B01G532800.1	Wheat	cytosol, plastid	69.86	70.83
HORVU3Hr1G106030.1	Barley	plastid	69.41	69.72
GSMUA_Achr11P...	Banana	cytosol	46.12	54.3
AT3G51930.1	Thale cress	cytosol, plastid	50.46	53.25
VIT_13s0019g01680.t01	Wine grape	plastid	48.17	53.15
CDX78047	Canola	plastid	50.46	52.87
KRH39863	Soybean	cytosol, plastid	49.77	52.4
PGSC0003DMT400017340	Potato	plastid	49.09	52.31
CDY23176	Canola	cytosol, plastid	50.23	51.89
Bra006883.1-P	Field mustard	plastid	50.23	51.89
CDX73675	Canola	cytosol, mitochondrion, plastid	50.0	51.65
Bra033466.1-P	Field mustard	cytosol, plastid	50.0	51.65
Solyc01g068250.2.1	Tomato	cytosol	48.4	50.96
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	33.1	29.84
EES07284	Sorghum	cytosol	29.45	29.59
OQU91330	Sorghum	mitochondrion	31.74	28.02
KXG26570	Sorghum	cytosol, plastid	29.91	27.81
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	31.96	27.61
EES02188	Sorghum	cytosol	27.85	22.68

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6Q866	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG34097
ProteinID:KXG34097	ProteinID:KXG34097.2	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF223	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G423000	SUPFAM:SSF50978	UniParc:UPI0009DC831B
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:72774936..72777882

Molecular Weight (calculated)

47247.7 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.251

Length

438 amino acids

Sequence
(BLAST)

001: MMTMPDADRA AMTAPLLPRP AYLTASLSSS SFASFNSSSS SSSTTSTTTS SSPSPHAFPP HAMPQPQGPC KALAVLRDHA GSVSSLSLCG EFLLSASTGG
101: DIVAWQQPDL RRFARFGHGE NGGSVKALAA AGGRVFSAHQ DGRVRVWRVS RRSRSENAFK LVAALPTARD YLGRVFRQAS YVQTRRNHRR LWIEHADSIS
201: CLAVHDAVLY SGSWDRTLKV WRIADLKCLE SIRAHDDAVN AVAADAGVVY SASADGRVKA WEKGKAAHFL QGVLVARDGV SWNALAVSAA DRRVYAAGSD
301: GHVAGWDRLG GRTAARWSLA CDVKAHDMAV LSLCVVRDLL CTGSADKTIG LWRRQSGGEL AKVGVVGGHE GPVKCIQASW CRLSNGCMVY SGSLDKTIRV
401: WWVPGALQDG NDHQEQQQEK SFKDQNQNQN EKASLFLR

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.