CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033304_P001	Maize	mitochondrion, plastid	87.5	90.23
TraesCS4A01G242800.1	Wheat	plastid	64.72	68.88
TraesCS4B01G072300.1	Wheat	plastid	64.72	67.86
TraesCS4B01G072200.1	Wheat	plastid	65.12	67.29
TraesCS4D01G071100.1	Wheat	plastid	64.31	67.16
TraesCS4A01G242900.1	Wheat	plastid	65.32	66.8
TraesCS4D01G071000.1	Wheat	plastid	65.12	66.74
HORVU4Hr1G012000.11	Barley	plastid	64.31	66.46
TraesCS4B01G072100.1	Wheat	plastid	64.31	65.77
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	56.85	55.62
GSMUA_Achr7P08190_001	Banana	cytosol	35.28	53.03
Os03t0625300-00	Rice	mitochondrion	54.23	51.24
GSMUA_Achr9P26470_001	Banana	nucleus	42.74	51.21
GSMUA_Achr9P09670_001	Banana	plastid	37.3	50.27
GSMUA_Achr6P34640_001	Banana	plastid	35.69	45.04
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	42.74	43.62
GSMUA_Achr2P17180_001	Banana	golgi	40.52	42.86
KXG34097	Sorghum	plastid	28.02	31.74
EES07284	Sorghum	cytosol	26.41	30.05
KXG26570	Sorghum	cytosol, plastid	28.23	29.72
EES02188	Sorghum	cytosol	30.24	27.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1Z5S5X9	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU91330	ProteinID:OQU91330
ProteinID:OQU91330.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF270	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G163600	SUPFAM:SSF50978	UniParc:UPI000B8B97A9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:13471307..13473279

Molecular Weight (calculated)

52252.1 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.192

Length

496 amino acids

Sequence
(BLAST)

001: MGNRKKLVHF LRVDRPAAAA AVSATSSPRS FSSNSSFSDD DGYASSSFQG SASSSPSRSS PPKSPWARLP GLTGAADDDA TATGLIASLV KEDGKVYSLA
101: AAGDVLYTGT DSETVRVWRD RRQLAGFRTG SGLVKAIVVA ADGRIFTGHQ DGKVRVWRAD GDAAGAVHRR VGSLPPLGDL LVSSVNPSSY VRSPRRRRAA
201: VWLRHSDAVS SLSLDEAAGL LYSASWDRTF KAWRVSDYRC LESVPAHDDA VNTVAAAGFG GLVLTGSADG TVKVWRREVA AAAGGDRTTR HVLERVLREG
301: GDGAVTAIAA CPEARAVYVG SSDGLVTCWR WGLDGGGEPR LAGVLAGHGT GVLCLAVSGR VVVSGSADGT LCVWRRDDEE EEHEGRHARL AVLVGHTGPV
401: KCVAVAADGD DDCYAYDADG ERRFVVYSGS LDGSVKVWRL SEERALEPPP AVEATTAPFM AALRESEAWM PRRRTAQLPA SPLQAWAPEL KGVAAA

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.