Factsheet for TraesCS4D01G071100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G072300.1	Wheat	plastid	96.0	96.41
TraesCS4A01G242800.1	Wheat	plastid	93.26	95.06
TraesCS4D01G071000.1	Wheat	plastid	91.79	90.08
HORVU4Hr1G012000.11	Barley	plastid	87.37	86.46
TraesCS5D01G074900.1	Wheat	cytosol	62.53	66.0
Zm00001d033304_P001	Maize	mitochondrion, plastid	66.74	65.9
OQU91330	Sorghum	mitochondrion	67.16	64.31
Os03t0625300-00	Rice	mitochondrion	60.63	54.86
GSMUA_Achr9P26470_001	Banana	nucleus	47.37	54.35
GSMUA_Achr7P08190_001	Banana	cytosol	35.79	51.52
GSMUA_Achr9P09670_001	Banana	plastid	38.74	50.0
TraesCS5D01G389000.1	Wheat	cytosol	47.16	47.16
GSMUA_Achr6P34640_001	Banana	plastid	37.26	45.04
GSMUA_Achr2P17180_001	Banana	golgi	42.74	43.28
TraesCS3D01G480400.1	Wheat	plastid	31.79	35.28
TraesCS2D01G338900.1	Wheat	plastid	26.95	28.96
TraesCS3D01G163800.1	Wheat	cytosol	30.53	28.71
TraesCS7D01G196700.1	Wheat	cytosol	29.05	27.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4D01G071100
EnsemblPlants:TraesCS4D01G071100.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:46185958..46187469

Molecular Weight (calculated)

50268.6 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.233

Length

475 amino acids

Sequence
(BLAST)

001: MGNHQKLLNF LRPDPAAVAA CSPRSFSSSS ASVSDDDGYS CSSYPTTDGD ASPSRYGGSS TPPTPKSPWA HLPGLGAGGA VAEPGATGLI ASLVKEDGHV
101: YSLAATGDVL YTGTDSRNVR VWRDQRELAG FRTASGLVKA IVVADDGRIF TGHQDGKVRV WRADADNPAV HRQVGSLPKL KDYLKSAVNP TSYVETQRKG
201: RQRAVWLRHS DAVSSLSLDE GAGLLYSASW DRTFKVWRVS DSKCLESVSA HDDAINTVAA AGFDDVVFTG SADGTVKVWR REMAAKSDAT KHVLEKVLGE
301: GESAVTAIAV SAEDRVVYVG SSDGLVTYWY WVDGEARYGG VLKGHKMAVM CLAVAGNVVV SGSADQTLCV WRRDGAEHVC LSVLTGHTGP VKCVAMDEEA
401: AVAGSGSDRR FVVYSGSLDG SVKVWRLSDA QTPAPVTERT AAPSQAWRGQ PAPATYAEAW APYQATAEAK RVPAA

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.