Factsheet for TraesCS3D01G480400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G532800.1	Wheat	cytosol, plastid	96.03	95.14
TraesCS3A01G485100.1	Wheat	plastid	91.82	94.47
HORVU3Hr1G106030.1	Barley	plastid	92.52	90.83
Os01t0946100-02	Rice	cytosol, plastid	71.5	71.0
KXG34097	Sorghum	plastid	71.73	70.09
Zm00001d042132_P001	Maize	plastid	63.08	67.16
GSMUA_Achr11P...	Banana	cytosol	46.73	53.76
VIT_13s0019g01680.t01	Wine grape	plastid	48.6	52.39
PGSC0003DMT400017340	Potato	plastid	50.23	52.31
KRH39863	Soybean	cytosol, plastid	50.7	52.16
AT3G51930.1	Thale cress	cytosol, plastid	50.23	51.81
CDY23176	Canola	cytosol, plastid	50.7	51.18
Solyc01g068250.2.1	Tomato	cytosol	49.53	50.96
CDX78047	Canola	plastid	49.77	50.96
Bra033466.1-P	Field mustard	cytosol, plastid	50.23	50.71
CDX73675	Canola	cytosol, mitochondrion, plastid	49.3	49.76
Bra006883.1-P	Field mustard	plastid	49.3	49.76
TraesCS5D01G074900.1	Wheat	cytosol	34.35	32.67
TraesCS4D01G071100.1	Wheat	plastid	35.28	31.79
TraesCS4D01G071000.1	Wheat	plastid	34.81	30.79
TraesCS5D01G389000.1	Wheat	cytosol	32.01	28.84
TraesCS2D01G338900.1	Wheat	plastid	27.8	26.92
TraesCS7D01G196700.1	Wheat	cytosol	28.74	24.75
TraesCS3D01G163800.1	Wheat	cytosol	26.87	22.77

Protein Annotations

EnsemblPlants:TraesCS3D01G480400.1	EnsemblPlantsGene:TraesCS3D01G480400	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:+:579129751..579131037

Molecular Weight (calculated)

45075.3 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.100

Length

428 amino acids

Sequence
(BLAST)

001: MPPDQQRAAM SEPLLPWPAS LPSSASSSFS TSASFPSFSA SSSPADAAPV RGDPSAAWKA LAVLRDAHSP GGAGSVSCLS LCGEFLLSAS TGADIVAWQQ
101: PDLRLFARFG HGGEGAVKAL AAAGGRVFSA HQDGRVRVWR VSRSSENAFK LVAALPTTRD YLGRVFRQAS YVQAGPRRGR RGGRRLWIEH ADSISCLAVA
201: AQDGVVYSGS WDRTLKVWRM SDLRCLESVR AHDDAINAVA ADCGVVYSAS ADGRVKAWER GKAGAGAHTL LAILVARDGV SWNAVAASGD ADATGRRVYA
301: AGSDGHVLGW DRHGARWSLA CDVKAHAMAV LCMCMAGDLV CTGSADKTIG LWRRQPCGGL AKVGAVGVHE GPVKCIQASL CRASNGYMVY SGGLDKSIRV
401: WWVPNGADGD ERPGETDAKD HRPCVFLR

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.