Factsheet for VIT_13s0019g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017340	Potato	plastid	73.55	71.05
Solyc01g068250.2.1	Tomato	cytosol	72.8	69.47
KRH39863	Soybean	cytosol, plastid	72.04	68.75
GSMUA_Achr11P...	Banana	cytosol	60.71	64.78
CDX78047	Canola	plastid	66.5	63.16
AT3G51930.1	Thale cress	cytosol, plastid	65.74	62.89
CDY23176	Canola	cytosol, plastid	66.75	62.5
Bra006883.1-P	Field mustard	plastid	66.25	62.03
CDX73675	Canola	cytosol, mitochondrion, plastid	66.25	62.03
Bra033466.1-P	Field mustard	cytosol, plastid	66.0	61.79
Os01t0946100-02	Rice	cytosol, plastid	55.42	51.04
TraesCS3A01G485100.1	Wheat	plastid	52.39	50.0
TraesCS3D01G480400.1	Wheat	plastid	52.39	48.6
KXG34097	Sorghum	plastid	53.15	48.17
TraesCS3B01G532800.1	Wheat	cytosol, plastid	52.14	47.92
HORVU3Hr1G106030.1	Barley	plastid	52.39	47.71
Zm00001d042132_P001	Maize	plastid	46.85	46.27
VIT_01s0026g00880.t01	Wine grape	cytosol	35.77	33.26
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	33.5	32.76
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	32.75	32.5
VIT_18s0001g11600.t01	Wine grape	nucleus	37.28	32.46
VIT_03s0063g01790.t01	Wine grape	cytosol	35.77	31.91
VIT_01s0137g00360.t01	Wine grape	cytosol	33.25	30.56
VIT_07s0255g00110.t01	Wine grape	nucleus	35.26	28.11
VIT_04s0008g03540.t01	Wine grape	cytosol	27.71	24.55
VIT_09s0002g04040.t01	Wine grape	nucleus	27.71	24.55
VIT_09s0002g04050.t01	Wine grape	cytosol	26.95	23.88
VIT_09s0002g04060.t01	Wine grape	nucleus	24.43	10.22

Protein Annotations

EntrezGene:100267171	wikigene:100267171	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM442709	ProteinID:CAN67368
ProteinID:CAN67368.1	ProteinID:CBI17748	ProteinID:CBI17748.3	UniProt:D7SQ19	EMBL:FN594963	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100267171
wikigene:LOC100267171	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001984750	ArrayExpress:VIT_13s0019g01680	EnsemblPlantsGene:VIT_13s0019g01680	EnsemblPlants:VIT_13s0019g01680.t01
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002268927	RefSeq:XP_002268927.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13_random:+:3137742..3138994

Molecular Weight (calculated)

43529.9 Da

IEP (calculated)

7.955

GRAVY (calculated)

-0.232

Length

397 amino acids

Sequence
(BLAST)

001: MNSSKTTPST PLLSAVTSSS SDGDDDSPVE RYGLEDVEYQ LSSVPVCGLP SYKSLAVLSG HVGSVSCLAL CGEFILSASQ GKDIIVWQQP DLRQFTKFGQ
101: GEGSVKALVT VGHKVFTAHQ DSRIRVWKVS RRSENVFRLV DTLPTTKDYL GKFMKQSNYV QTRRHHKRLW IEHADSISCL TICNGLIYSG SWDKTLKVWR
201: IADLKCLESI KAHDDAINGL VSCKGLVYSA SADGKIKAWG KEGDNSHSLK GILEGNKDVS LNSVVVSEDG RVVYGGGSDG YVMEWEGSLK LDSWKLVCKA
301: KAHEMAVLCM CLMEEFLCTG SADKSIGIWR RDADGGLCRV GIVRGHEGPV KCLQASPHCV GGGFLLYSGS LDRSLRVWWV PKDSAKTEEK NHPTIQY

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.