Factsheet for VIT_09s0002g04060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044320.1.1	Tomato	cytosol, plastid	34.04	71.3
PGSC0003DMT400068048	Potato	cytosol, plastid	33.93	71.08
KRH23424	Soybean	plastid	29.93	64.4
KRH09907	Soybean	cytosol, plastid	17.39	63.22
VIT_04s0008g03540.t01	Wine grape	cytosol	16.54	35.04
VIT_09s0002g04040.t01	Wine grape	nucleus	14.75	31.25
VIT_18s0001g11600.t01	Wine grape	nucleus	14.86	30.92
VIT_01s0026g00880.t01	Wine grape	cytosol	13.59	30.21
VIT_09s0002g04050.t01	Wine grape	cytosol	14.23	30.13
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	12.86	30.05
VIT_03s0063g01790.t01	Wine grape	cytosol	13.91	29.66
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	12.22	29.0
VIT_01s0137g00360.t01	Wine grape	cytosol	12.33	27.08
VIT_07s0255g00110.t01	Wine grape	nucleus	14.12	26.91
VIT_13s0019g01680.t01	Wine grape	plastid	10.22	24.43

Protein Annotations

EntrezGene:100256579	wikigene:100256579	EntrezGene:100266864	wikigene:100266864	Gene3D:2.130.10.10	Gene3D:3.30.1370.10
MapMan:35.1	EMBL:AM464761	ProteinID:CAN70339	ProteinID:CAN70339.1	ProteinID:CCB59456	ProteinID:CCB59456.1
UniProt:F6HYD3	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	InterPro:Kinase-A_anchor_nucl_local_sig	EntrezGene:LOC100256579	wikigene:LOC100256579	EntrezGene:LOC100266864
wikigene:LOC100266864	PFAM:PF00013	PFAM:PF00400	PFAM:PF10469	PFscan:PS50082	PFscan:PS50084
PFscan:PS50294	PANTHER:PTHR22844	SMART:SM00320	SMART:SM00322	SUPFAM:SSF50978	SUPFAM:SSF54791
SUPFAM:SSF55144	UniParc:UPI000210A4D7	ArrayExpress:VIT_09s0002g04060	EnsemblPlantsGene:VIT_09s0002g04060	EnsemblPlants:VIT_09s0002g04060.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002279009	RefSeq:XP_002279009.1	RefSeq:XP_002279039
RefSeq:XP_002279039.1	InterPro:cNuc_Pdiesterase	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:3727472..3742305

Molecular Weight (calculated)

105488.0 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.415

Length

949 amino acids

Sequence
(BLAST)

001: MGSSIDSPNS PQCPSFAIRD ETHNRFLRSI STKEPSFSEL PHTPSRLSSG SLSSPCHHTA SLPSSPRHSF APTKLKLDHD HLPTSHRCVS SVLKKDGQIL
101: SIAASNGLVY TGSETNLVRV WKLPEFTECG QLKTKACMVV ALEVSNDRVY AAYADAKIRV WRRTWDGAPK HVRLATIPRT GIYVRGYISG KDKMMKHMGA
201: ITSLAINISD DILYSASLDK TVKVWRISDH KCIETIQAHT DPVNAIVVAD DGVLYTASDD ATVRVWRRNF CSGDRPHSLT VTLPAKNSPV KTLSLTGDGA
301: VLYGGCTDGY IHYWHKGWFS GQLQYGGALQ GHTHAVMCLA SVSNYVISGS ADSTCRVWTR EQDGQHKCLA VLQGHRGPVR CVSVLPARAR DDGEDGCSIC
401: TGSLDGILKV WHVSPKGNAG RHWTQKPEGE AAETRMIACR SLFRVDRVGK FSSAVDYFLQ GHCHYHGLRY NRKMSGAKGM QGAIDQNKKR RTVNRVWRPV
501: CTQASSYEEC FEKDVKVECE SQHEVLVDKL EEGSQSQEVH YNTSSCVSNV QCVNEDAEAV NEIADSVTSS RALQDKDENK AIEEEPILSD LKHSISVEVG
601: ASLMRFIKGK GGSTQKNIEE EMGVTIIFPS SKKEDSIVIE GDSIEGINRA SEKIQVIIDE VVKSPNLDYS HFISLPLAIY PELVDKLVSF QNSILGNPCK
701: DENLDSESNE ETSDDEDQQL DRQLDVAVEL KVEDDSKHVK VDITNISLRS YPPKTSKPSA PSELGIEKSI FIKPKTFHLT VLMLKLWNKE RVDAAAKVLQ
801: NISSKVMEAL DDRPVSIRLK GLDCMRGSLS KARVLYAPVV EIGSEDRLLL ACQVIIDAYV EAGLVLDKDR GQKLKLHATV MNARHRKRKK KTRKSDSFDA
901: RGIFKQYGSE EWGDYIIREA HLSQRFVFDE NGYYHCCASI PFPENMQVD

Best Arabidopsis Sequence Match ( AT3G16230.1 )
(BLAST)

001: MFAYRTLFRI DRVFGFTSRC FQSKPESFSI LSFRGSEKSA MDGYKKQKMV NLVWRPISTQ TSSVIAEAGN EVQEVAQCSK SSDVSKEVIE GETASVVSAG
101: KHSVSLEVGA SLIKFIRGKE GTTQMKLEEE MGVKIILPSS RNKDHISIEG GSVDCVTKAS KRIATIIDEV VRSPSLDYSH FVSLPLAIHP ELVDKLVNFQ
201: NSILGIHSIA SDKQDDQANR ATTSVAVDLK ANSETNQVNV GIKSIPIVSY PPKAKSKSST LLDLGIEKSI FIKPSTFHLT VVMLKLWNKD RVNAACDVLK
301: SIFPSVMDAL DNKPVFIRLK GLDCMRGPLD KTRVLYAPVE EIGDEGRLLR ACQVITDAFV KAGLVLEKDA KQSLKLHVTV MNARHRKRRK NNKKKMETFD
401: AREIHKQFGN EDWGEYLIQE AHLSQRFVFD QNGYYRCCGS IPFPGEQRA

Arabidopsis Description

Putative eukaryotic LigT [Source:UniProtKB/TrEMBL;Acc:F4J1H2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.