Factsheet for VIT_17s0000g07690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57017	Soybean	plastid	61.82	63.71
VIT_01s0026g00880.t01	Wine grape	cytosol	65.02	61.83
KRH03365	Soybean	nucleus, plastid	61.08	61.08
PGSC0003DMT400062862	Potato	cytosol	59.11	60.91
KRH54449	Soybean	plastid	62.56	60.33
KRH63468	Soybean	plastid	61.82	60.05
AT5G50120.1	Thale cress	nucleus	54.93	57.47
CDY21432	Canola	cytosol, nucleus, plastid	54.43	56.96
Bra000611.1-P	Field mustard	nucleus	54.19	56.56
CDY70872	Canola	nucleus	52.22	55.06
Solyc03g113850.1.1	Tomato	cytosol, plastid	59.85	51.27
GSMUA_Achr6P36100_001	Banana	cytosol	47.29	48.85
GSMUA_Achr7P19910_001	Banana	cytosol	50.0	46.14
HORVU7Hr1G039810.1	Barley	plastid	43.6	46.09
Os02t0740900-01	Rice	plastid	45.07	44.96
TraesCS7B01G100800.1	Wheat	cytosol	42.61	44.82
EES07284	Sorghum	cytosol	48.03	44.72
Zm00001d017994_P001	Maize	cytosol	38.42	43.82
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	41.87	42.61
VIT_01s0137g00360.t01	Wine grape	cytosol	45.07	42.36
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	37.19	37.75
TraesCS7D01G196700.1	Wheat	cytosol	42.61	34.81
TraesCS7A01G195200.1	Wheat	cytosol	42.36	34.54
VIT_13s0019g01680.t01	Wine grape	plastid	32.76	33.5
VIT_03s0063g01790.t01	Wine grape	cytosol	36.7	33.48
VIT_18s0001g11600.t01	Wine grape	nucleus	36.95	32.89
VIT_07s0255g00110.t01	Wine grape	nucleus	35.71	29.12
VIT_04s0008g03540.t01	Wine grape	cytosol	31.53	28.57
VIT_09s0002g04040.t01	Wine grape	nucleus	28.82	26.12
VIT_09s0002g04050.t01	Wine grape	cytosol	27.34	24.78
VIT_09s0002g04060.t01	Wine grape	nucleus	30.05	12.86

Protein Annotations

EntrezGene:100251957	wikigene:100251957	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB43010	ProteinID:CCB43010.1
UniProt:F6GSV3	EMBL:FN594950	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100251957	wikigene:LOC100251957	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF322	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002108F3E	ArrayExpress:VIT_17s0000g07690	EnsemblPlantsGene:VIT_17s0000g07690	EnsemblPlants:VIT_17s0000g07690.t01	unigene:Vvi.22926
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002280390	RefSeq:XP_002280390.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:8671015..8672326

Molecular Weight (calculated)

44726.8 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.225

Length

406 amino acids

Sequence
(BLAST)

001: MSAHQPSHSG DYSASQFFHV QSELISLSSQ PSLPSVPSLT SQTQQQQLYL PSTTTTHHCV TTFKGHTSYV SSLALAGNFL FSGSSDKEIR LWEQNLNSEL
101: DHENISNNVV AVGKGAVKSM VVLGDKLFSA HQDHKIRVWK INDQDPHHQK CTRLATLPTL GDRAIKLLTP NNHVQIRRHK KCTWVHHVDT VSVLALSEDN
201: SLLYSVSWDR SLKIWRTTDF KCLESVGNAH DDAINALALS HDGYIYTGSA DKTIKVWRKA PEDKKHSQVA TLEKHNSGIN ALALSTDGSV LYSGASDRSI
301: VVWEKDYSGN MVVVGALRGH SKSILCLAVV SDVVFSGSAD NTIRIWRGIH KSYSCLAILE GHTGPVKCLT AATDCYNPSN TSTSYLVYSG SLDCDIKVWQ
401: IFIPLL

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.