Factsheet for Solyc03g113850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062862	Potato	cytosol	78.06	93.91
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	51.27	59.85
KRH57017	Soybean	plastid	47.05	56.6
KRH03365	Soybean	nucleus, plastid	47.05	54.93
KRH63468	Soybean	plastid	48.31	54.78
KRH54449	Soybean	plastid	48.52	54.63
CDY21432	Canola	cytosol, nucleus, plastid	43.46	53.09
AT5G50120.1	Thale cress	nucleus	43.25	52.84
Bra000611.1-P	Field mustard	nucleus	43.25	52.7
CDY70872	Canola	nucleus	41.14	50.65
Solyc05g006340.2.1	Tomato	cytosol	42.19	48.19
Solyc04g005020.2.1	Tomato	plastid	43.25	47.79
Os02t0740900-01	Rice	plastid	37.13	43.24
GSMUA_Achr6P36100_001	Banana	cytosol	35.44	42.75
Zm00001d017994_P001	Maize	cytosol	31.86	42.42
EES07284	Sorghum	cytosol	38.4	41.74
HORVU7Hr1G039810.1	Barley	plastid	33.76	41.67
GSMUA_Achr7P19910_001	Banana	cytosol	37.76	40.68
TraesCS7B01G100800.1	Wheat	cytosol	33.12	40.67
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	33.54	39.85
Solyc05g013880.1.1	Tomato	cytosol, plastid	35.65	39.76
Solyc03g111780.1.1	Tomato	cytosol	31.65	37.41
Solyc12g088980.1.1	Tomato	cytosol	29.54	34.48
TraesCS7A01G195200.1	Wheat	cytosol	34.18	32.53
TraesCS7D01G196700.1	Wheat	cytosol	33.76	32.19
Solyc01g068250.2.1	Tomato	cytosol	27.43	31.25
Solyc07g025140.2.1	Tomato	cytosol	28.48	30.54
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	29.75	30.32
Solyc03g044830.2.1	Tomato	nucleus	28.69	29.76
Solyc04g079700.2.1	Tomato	cytosol	27.64	29.5
Solyc02g090150.1.1	Tomato	nucleus	27.64	28.98
Solyc12g044320.1.1	Tomato	cytosol, plastid	24.47	25.61

Protein Annotations

EnsemblPlants:Solyc03g113850.1.1	EnsemblPlantsGene:Solyc03g113850.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002767E0F	UniProt:K4BKN7	MapMan:35.1	:

Description

No Description!

Coordinates

chr3:+:63909400..63910824

Molecular Weight (calculated)

53405.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.129

Length

474 amino acids

Sequence
(BLAST)

001: MMPFYQTSCS RNSSKAEQEK PTSLDSQPSF RSVPSIKSLC HDQSFSRNLE TQHQCIANLK GQNSYTSSLV LGGKFLFTGS SDKEICMWEQ KALTSTIDAS
101: IIDTVIAGEG AVKSLVILAD KVFSAHQDHK IRVWRIENHD TDTPKIVHLA TLPILSDRAF KFMLPKNHVQ IRRHKKSTWV HHVDTVSALA LSNNKSFLYS
201: VSWDRTLKIW RTSDFKCLES IANAHDDAIN ALEISQDGDV FTGSADKRIK MWRKEEKKHL LVCTLEKHRS GVNALAVGRS STSTHSVLYS GACDRSILVW
301: EKDENGEMVL VGALRGHKKS ILCLAVVADL VCSGSEDKTV RVWRGVERCY SCLSVISGHS GPVKCLTVTS DQQIPSDTNS SYVLYTASLD GETKVGRFLF
401: LFSKAICMMN MVKICQLTYL YTIFCIIDCW ASDLEKKISA KFQLFFLFSW IVYSIEKGYH YEMIMLLKLG NHFD

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.