Factsheet for Solyc02g090150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026153	Potato	nucleus	96.24	94.57
Solyc03g044830.2.1	Tomato	nucleus	69.47	68.71
VIT_07s0255g00110.t01	Wine grape	nucleus	62.39	56.63
KRH76925	Soybean	nucleus	56.86	55.87
KRH28540	Soybean	nucleus	55.75	55.02
Solyc12g088980.1.1	Tomato	cytosol	49.34	54.93
CDY02088	Canola	cytosol, mitochondrion, nucleus	54.42	54.19
CDY23013	Canola	cytosol	54.2	53.85
Solyc07g025140.2.1	Tomato	cytosol	52.21	53.39
Solyc04g079700.2.1	Tomato	cytosol	52.21	53.15
Bra036080.1-P	Field mustard	cytosol	54.2	53.15
CDY17780	Canola	cytosol	54.2	53.15
Bra012903.1-P	Field mustard	cytosol	54.42	53.02
CDY52834	Canola	cytosol	53.76	52.6
AT3G50390.1	Thale cress	cytosol	53.98	52.03
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	50.22	48.82
Solyc01g068250.2.1	Tomato	cytosol	31.64	34.38
Solyc05g006340.2.1	Tomato	cytosol	29.65	32.29
Solyc04g005020.2.1	Tomato	plastid	30.53	32.17
Solyc05g013880.1.1	Tomato	cytosol, plastid	28.54	30.35
Solyc12g044320.1.1	Tomato	cytosol, plastid	28.54	28.48
Solyc03g111780.1.1	Tomato	cytosol	25.22	28.43
Solyc03g113850.1.1	Tomato	cytosol, plastid	28.98	27.64

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BCG6	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc02g090150.1	EnsemblPlants:Solyc02g090150.1.1	UniParc:UPI0002769061	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:51788895..51790253

Molecular Weight (calculated)

50090.9 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.480

Length

452 amino acids

Sequence
(BLAST)

001: MTTEENSHPK QALHDPNEDE YSFRISHTSE TSHLPPRLSS DYSSPLATSP TRDSSASPYL DPYWDQSHQT SPLSRSPWTS HVENNYSYTG LMGSLVREEG
101: HIYSLAASGD LLYTGSDSKN IRVWKNHKEF SGFKSNSGLV KAIILCGERI FTGHQDGKIR VWKVSGKDSS VYNRIGTMPT LMAYIKTSMK PSNYIQTRRN
201: RNTVWIKHFD AISCLSMSED QKLLYSASWD KTIKVWRASD SKCLESIQAH NDAVNSIVVG FNGLLFSGSA DGTVKIWRKE SQGKGTKHFF SQTLLKQECA
301: VTALAVDPSS NFLYCGSSDG LVNFWQGDKL LSHGGVLRGH KLATLCLAAA GNLIFSGSAD NNICVWKRDG AEHICLSVLS GHSGPVKCLA VEEEQQQKGS
401: DKQFIVYSGS LDKSVKIWRI SSQLVPNQAE VGMSPPQNFP TSNSCRVSQR RK

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.