Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090150.1.1 | Tomato | nucleus | 94.57 | 96.24 |
| PGSC0003DMT400059001 | Potato | extracellular | 70.87 | 71.02 |
| VIT_07s0255g00110.t01 | Wine grape | nucleus | 63.04 | 58.23 |
| KRH76925 | Soybean | nucleus | 56.96 | 56.96 |
| KRH28540 | Soybean | nucleus | 55.65 | 55.9 |
| PGSC0003DMT400039941 | Potato | cytosol | 49.35 | 55.77 |
| CDY02088 | Canola | cytosol, mitochondrion, nucleus | 54.35 | 55.07 |
| PGSC0003DMT400008621 | Potato | mitochondrion | 51.3 | 54.88 |
| CDY23013 | Canola | cytosol | 54.13 | 54.73 |
| Bra036080.1-P | Field mustard | cytosol | 54.13 | 54.01 |
| CDY17780 | Canola | cytosol | 54.13 | 54.01 |
| Bra012903.1-P | Field mustard | cytosol | 54.35 | 53.88 |
| PGSC0003DMT400016680 | Potato | cytosol | 52.17 | 53.81 |
| CDY52834 | Canola | cytosol | 53.7 | 53.46 |
| AT3G50390.1 | Thale cress | cytosol | 53.7 | 52.67 |
| PGSC0003DMT400066737 | Potato | cytosol, mitochondrion | 51.52 | 50.86 |
| PGSC0003DMT400017340 | Potato | plastid | 31.52 | 35.28 |
| PGSC0003DMT400062862 | Potato | cytosol | 29.35 | 34.26 |
| PGSC0003DMT400040333 | Potato | cytosol | 31.09 | 33.18 |
| PGSC0003DMT400004842 | Potato | plastid | 30.87 | 32.95 |
| PGSC0003DMT400024834 | Potato | cytosol | 33.04 | 32.0 |
| PGSC0003DMT400043704 | Potato | plastid | 29.57 | 31.19 |
| PGSC0003DMT400068048 | Potato | cytosol, plastid | 28.04 | 28.48 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1AMR1 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG400010081 |
| PGSC:PGSC0003DMG400010081 | EnsemblPlants:PGSC0003DMT400026153 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 |
| PANTHER:PTHR22844:SF270 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000295F5D0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010081]
Coordinates
chr2:-:44601247..44603282
Molecular Weight (calculated)
50761.5 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.503
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEENSHPK QAFGNVLQSD RNEDEYSFRI SHTSETSHLP PRLSSDYSSP LATSPTRDSS ASPYLDPSWD QSHQTSPLSR SPWTSHVENN STNYSYTGLM
101: GSLVREEGHI YSLAASGDLL YTGSDSKNIR VWKNHKEFSG FKSNSGLVKA IILSGERIFT GHQDGKIRVW KVSGKDPSLY NRIGTLPTLM AYIKTSMKPS
201: NYIQTRRNRN TVWIKHFDAI SCLSMSEDQK LLYSASWDKT IKVWRASDSK CLESIKAHDD AVNSIVVGFN GLLFSGSADG TVKIWRKESQ GKGTKHFFSQ
301: TLLKQECAVT ALAVDPSSNY LYCGSSDGLV NFWQGDKLLS HGGVLRGHKL ATLCLAAAGN LIFSGSADNN ICVWKRDGGE HICLSVLSGH SGPVKCLAVE
401: EEQEQKGGDK QFIVYSGSLD KSVKIWRISS QLVPNQAEVG TSPPQNFPSS NSCRVSQRRK
101: GSLVREEGHI YSLAASGDLL YTGSDSKNIR VWKNHKEFSG FKSNSGLVKA IILSGERIFT GHQDGKIRVW KVSGKDPSLY NRIGTLPTLM AYIKTSMKPS
201: NYIQTRRNRN TVWIKHFDAI SCLSMSEDQK LLYSASWDKT IKVWRASDSK CLESIKAHDD AVNSIVVGFN GLLFSGSADG TVKIWRKESQ GKGTKHFFSQ
301: TLLKQECAVT ALAVDPSSNY LYCGSSDGLV NFWQGDKLLS HGGVLRGHKL ATLCLAAAGN LIFSGSADNN ICVWKRDGGE HICLSVLSGH SGPVKCLAVE
401: EEQEQKGGDK QFIVYSGSLD KSVKIWRISS QLVPNQAEVG TSPPQNFPSS NSCRVSQRRK
001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK
Arabidopsis Description
At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.