Factsheet for VIT_07s0255g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059001	Potato	extracellular	58.23	63.18
PGSC0003DMT400026153	Potato	nucleus	58.23	63.04
Solyc03g044830.2.1	Tomato	nucleus	57.83	63.02
VIT_03s0063g01790.t01	Wine grape	cytosol	56.02	62.7
Solyc02g090150.1.1	Tomato	nucleus	56.63	62.39
VIT_18s0001g11600.t01	Wine grape	nucleus	56.63	61.84
CDY23013	Canola	cytosol	55.22	60.44
CDY02088	Canola	cytosol, mitochondrion, nucleus	55.02	60.35
CDY17780	Canola	cytosol	55.62	60.09
KRH28540	Soybean	nucleus	55.22	60.04
KRH76925	Soybean	nucleus	55.42	60.0
AT3G50390.1	Thale cress	cytosol	56.22	59.7
Bra036080.1-P	Field mustard	cytosol	55.02	59.44
CDY52834	Canola	cytosol	54.82	59.09
Bra012903.1-P	Field mustard	cytosol	54.82	58.84
VIT_04s0008g03540.t01	Wine grape	cytosol	33.13	36.83
VIT_01s0026g00880.t01	Wine grape	cytosol	31.33	36.53
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	28.92	36.0
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	29.12	35.71
VIT_13s0019g01680.t01	Wine grape	plastid	28.11	35.26
VIT_01s0137g00360.t01	Wine grape	cytosol	30.12	34.72
VIT_09s0002g04040.t01	Wine grape	nucleus	30.12	33.48
VIT_09s0002g04050.t01	Wine grape	cytosol	28.92	32.14
VIT_09s0002g04060.t01	Wine grape	nucleus	26.91	14.12

Protein Annotations

EntrezGene:100253417	wikigene:100253417	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM429100	ProteinID:CAN66843
ProteinID:CAN66843.1	ProteinID:CCB62855	ProteinID:CCB62855.1	UniProt:F6I7D7	EMBL:FN596776	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100253417	wikigene:LOC100253417	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002109EA2	ArrayExpress:VIT_07s0255g00110
EnsemblPlantsGene:VIT_07s0255g00110	EnsemblPlants:VIT_07s0255g00110.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002268809	RefSeq:XP_002268809.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:14429207..14431822

Molecular Weight (calculated)

55327.6 Da

IEP (calculated)

9.033

GRAVY (calculated)

-0.362

Length

498 amino acids

Sequence
(BLAST)

001: MRDSPQGKML EESNSLERQT FGNLMHSAPP DDDFSFRNSA SSAPSPAHNG DASPYIGTWE GASSPYTKSP WSSHVVPPSN GNHYPNGLMG SLVREEGHIY
101: SLATSGDLLY TGSDSKNIRV WKNQKEFSGF KSNSGLVKAI IISGEKIFTG HQDGKIRVWK VSAKNPSVHK RVGTLPTFRD YIRSSMNPSN YVEVRRHRNA
201: LWIKHFDAIS SLSLSEDKKF LYSASWDKTI KVWRISDSKC LESVNVHDDA VNAVVAGFDG LVFTGSADGS VKVWRRELQA KGTKHFFSQT LLKQECAVTA
301: LAVNPEATFL YCGSSDGLVN FWEREKHLSH GGILRGHKLA VLCLVAAGNL VFSGSADMGI CVWRRLEGDH SCLAVLTGHN GPVKCLAIED DIESTAADRR
401: WILYSGSLDK SVKMWRVSEL APPHLQQIDS IKRRQIEGLS SPSPSPSTQS QSFSPQGRRY HVFCIVIMNR DRNCPPHNVT ALQKLMWVFL MRADLIFD

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.