Factsheet for VIT_09s0002g04050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04040.t01	Wine grape	nucleus	68.08	68.08
VIT_04s0008g03540.t01	Wine grape	cytosol	60.04	60.04
PGSC0003DMT400024834	Potato	cytosol	57.59	54.32
GSMUA_Achr10P...	Banana	nucleus	48.21	45.96
TraesCS3D01G163800.1	Wheat	cytosol	40.4	35.84
TraesCS3A01G156000.1	Wheat	cytosol	40.4	35.77
HORVU3Hr1G031720.2	Barley	cytosol	40.4	35.7
TraesCS3B01G182500.1	Wheat	cytosol	40.18	35.64
Zm00001d009003_P001	Maize	cytosol	41.07	35.38
EES02188	Sorghum	cytosol	41.29	34.39
Os01t0232200-00	Rice	cytosol	39.96	34.1
Zm00001d039292_P001	Maize	cytosol	40.62	34.08
VIT_18s0001g11600.t01	Wine grape	nucleus	31.47	30.92
VIT_03s0063g01790.t01	Wine grape	cytosol	29.24	29.44
VIT_07s0255g00110.t01	Wine grape	nucleus	32.14	28.92
VIT_01s0026g00880.t01	Wine grape	cytosol	26.34	27.63
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	24.78	27.34
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	24.11	27.0
VIT_13s0019g01680.t01	Wine grape	plastid	23.88	26.95
VIT_01s0137g00360.t01	Wine grape	cytosol	22.77	23.61
VIT_09s0002g04060.t01	Wine grape	nucleus	30.13	14.23

Protein Annotations

EntrezGene:100244541	wikigene:100244541	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM464761	ProteinID:CAN70338
ProteinID:CAN70338.1	ProteinID:CCB59455	ProteinID:CCB59455.1	UniProt:F6HYD2	EMBL:FN596494	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100244541	wikigene:LOC100244541	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF213	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC68341
UniParc:UPI0001983FF2	ArrayExpress:VIT_09s0002g04050	EnsemblPlantsGene:VIT_09s0002g04050	EnsemblPlants:VIT_09s0002g04050.t01	unigene:Vvi.15961	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002278993	RefSeq:XP_002278993.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3724567..3726072

Molecular Weight (calculated)

50922.7 Da

IEP (calculated)

7.737

GRAVY (calculated)

-0.229

Length

448 amino acids

Sequence
(BLAST)

001: MEFYRKRTLQ SLMEEERNGV WLPSRACFTA HQNVYEPEPN SQFASARASS ASVMSIPLCT TSAETPWTLS PIHMSSPNSL LYQCLASLHR HEGDIFAIAV
101: SGDVIFTGSE TCRIHAWEQP YCTKIGHIKA NASEVRAILA YGKVLFTTHS DFKIRVWDVS ITEGFHPKKI TTLPQRSPFF LFSRKNSHQH KDYITCLAYN
201: HVEKLLYTGS WDRTVKAWKV SENQCVDSFL AHKGHVNAIV INQQDGCVFS CSSDGTVKIW RRVYGEGSHM LTTTLKFQPS PVNALALSSS SNTCFLYSGS
301: SDGLINFWEK ERMSGRFNNR GFLQGHHFAV LCLEAVMELL LIGSEDTTIK IWRRDENHFH SCLVVIDRHQ GPVRCLAAAL EMESIVMWLL VYSVSSDQTL
401: KVWRVKFPTE KNLQDSEVNE QLTENIEFKI SPVLSPSWVE KKLQGNHF

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.