Factsheet for Zm00001d039292_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009003_P001	Maize	cytosol	85.58	87.88
EES02188	Sorghum	cytosol	85.58	84.94
TraesCS3A01G156000.1	Wheat	cytosol	77.9	82.21
HORVU3Hr1G031720.2	Barley	cytosol	77.72	81.85
TraesCS3D01G163800.1	Wheat	cytosol	77.34	81.78
TraesCS3B01G182500.1	Wheat	cytosol	77.34	81.78
Os01t0232200-00	Rice	cytosol	75.47	76.76
GSMUA_Achr10P...	Banana	nucleus	42.32	48.09
VIT_04s0008g03540.t01	Wine grape	cytosol	40.26	47.99
KRH62060	Soybean	cytosol	35.02	45.06
KRH52729	Soybean	cytosol	38.39	44.86
PGSC0003DMT400024834	Potato	cytosol	39.51	44.42
VIT_09s0002g04040.t01	Wine grape	nucleus	35.96	42.86
VIT_09s0002g04050.t01	Wine grape	cytosol	34.08	40.62
Zm00001d033304_P001	Maize	mitochondrion, plastid	29.03	32.22
Zm00001d041381_P001	Maize	cytosol, mitochondrion	27.9	31.57
Zm00001d017994_P001	Maize	cytosol	20.41	30.62
Zm00001d042132_P001	Maize	plastid	19.66	26.12
Zm00001d025699_P001	Maize	plastid	21.54	25.44
Zm00001d003272_P001	Maize	cytosol, plastid	19.85	23.5

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6MF10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM28219.1	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF213	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00084285B8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d039292	EnsemblPlants:Zm00001d039292_P001	EnsemblPlants:Zm00001d039292_T001	SEG:seg	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr3:+:1163654..1165258

Molecular Weight (calculated)

56619.1 Da

IEP (calculated)

7.444

GRAVY (calculated)

-0.176

Length

534 amino acids

Sequence
(BLAST)

001: MDFGRRKSFS FFEEDRKSSR PGAHTSTPVH QYYARAGGGG RSPAREPARL SMSSAVPSHG RLGVEVPLPP VQLGGGCSPW VQSPLHGRSR FPPSPAAIYH
101: CLAALHRLEG DVHALAVARG VLFTASDSGR VRAWAAPGCF NRGYLDVGRG RVPALAACGG TLVTSHARDH RVRVWTVCAA AVCDHVRAKK AATLPAKPSL
201: LLHPFGKRRP QQHRDTVSCL VLHAVAGLLY TASYDHTVKA WRLSDGSCVD SFAAHDGPVN AMVVNEADGC VFTGSADGTV KMWRRVYGGT AHALIIVLRS
301: ELSPVNALAL CHAVGGSGGG ATRRCCFLYA GCSDGYVNVW EKEATVGRPT HAGYLKGHRL AVFCLASGCG GRVVVSGSED ATMRVWRREG ISKGGGGAVH
401: TCLAVIEGHR GPVRCLAVGG GEAGEVEGSM VVYSSGLDKS VKVWRIRVVG KEEEEDDDEE LDEDGVEDND HPEAAVAGEI FMEGGKGDGL DAHAIPVAMD
501: DVVDGTEDEE AEFVGSTPVL SPVWVEKRRH TSRG

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.