Factsheet for VIT_09s0002g04040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04050.t01	Wine grape	cytosol	68.08	68.08
VIT_04s0008g03540.t01	Wine grape	cytosol	61.61	61.61
PGSC0003DMT400024834	Potato	cytosol	60.49	57.05
GSMUA_Achr10P...	Banana	nucleus	51.56	49.15
TraesCS3B01G182500.1	Wheat	cytosol	42.63	37.82
TraesCS3A01G156000.1	Wheat	cytosol	42.63	37.75
HORVU3Hr1G031720.2	Barley	cytosol	42.63	37.67
TraesCS3D01G163800.1	Wheat	cytosol	42.41	37.62
Zm00001d009003_P001	Maize	cytosol	43.53	37.5
EES02188	Sorghum	cytosol	43.53	36.25
Os01t0232200-00	Rice	cytosol	42.19	36.0
Zm00001d039292_P001	Maize	cytosol	42.86	35.96
VIT_18s0001g11600.t01	Wine grape	nucleus	32.59	32.02
VIT_03s0063g01790.t01	Wine grape	cytosol	31.7	31.91
VIT_01s0026g00880.t01	Wine grape	cytosol	28.79	30.21
VIT_07s0255g00110.t01	Wine grape	nucleus	33.48	30.12
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	26.12	28.82
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	25.67	28.75
VIT_13s0019g01680.t01	Wine grape	plastid	24.55	27.71
VIT_01s0137g00360.t01	Wine grape	cytosol	23.88	24.77
VIT_09s0002g04060.t01	Wine grape	nucleus	31.25	14.75

Protein Annotations

EntrezGene:100249690	wikigene:100249690	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM464761	ProteinID:CAN70337
ProteinID:CAN70337.1	ProteinID:CCB59454	ProteinID:CCB59454.1	UniProt:F6HYD1	EMBL:FN596494	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100249690	wikigene:LOC100249690	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF213	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001983FF1
ArrayExpress:VIT_09s0002g04040	EnsemblPlantsGene:VIT_09s0002g04040	EnsemblPlants:VIT_09s0002g04040.t01	unigene:Vvi.19663	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002278977	RefSeq:XP_002278977.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:3722226..3723745

Molecular Weight (calculated)

50686.3 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.280

Length

448 amino acids

Sequence
(BLAST)

001: MEFYGKGNLW NFVEEERRNM HFTRSLSFST DQNVSEPHES PFVSPKASSA SATSIPLSPM SPETPWKLSP MHASPSPSLL YHCLASLHRY EGNVFSIAIS
101: RDFIFTGSES SRIHTWKRPD CTEVGHIKAS SPDVRAILAH GRILFTTHGD CKIRVWDVSV TEKFRPKKIT TLPHRNPFFL FPKKNSHQHK DYISCLAYND
201: GEKLLYTGSW DKSVKVWNIF EKRCVDSFVA HEGHINAIVI NQQDGCVFTC SSDGAVKIWR RVYGESSHIL TMTLKFQLSP VNTLALSSSP SSCFLYSGSS
301: DGLINFWDKE KTSGRFNHCG FLQGHHFAVL CLATIRELIL SGSEDATIRV WRREEGHCFH SCLAVMDGHH GPVRCLAASL EIEGLLVYSA SLDRTFKVWR
401: VKLLTPEKAA MEELVVTNDQ QTEIEECKMS PVLSPSWVEK KIQANHFQ

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.