Factsheet for PGSC0003DMT400024834

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52729	Soybean	cytosol	64.42	66.96
KRH62060	Soybean	cytosol	57.47	65.78
VIT_09s0002g04040.t01	Wine grape	nucleus	57.05	60.49
VIT_09s0002g04050.t01	Wine grape	cytosol	54.32	57.59
GSMUA_Achr10P...	Banana	nucleus	53.47	54.04
TraesCS3D01G163800.1	Wheat	cytosol	42.74	40.2
TraesCS3B01G182500.1	Wheat	cytosol	42.74	40.2
TraesCS3A01G156000.1	Wheat	cytosol	42.74	40.12
HORVU3Hr1G031720.2	Barley	cytosol	42.74	40.04
Zm00001d009003_P001	Maize	cytosol	43.79	40.0
Zm00001d039292_P001	Maize	cytosol	44.42	39.51
EES02188	Sorghum	cytosol	44.42	39.22
Os01t0232200-00	Rice	cytosol	42.11	38.1
PGSC0003DMT400039941	Potato	cytosol	30.32	35.38
PGSC0003DMT400059001	Potato	extracellular	32.42	33.55
PGSC0003DMT400026153	Potato	nucleus	32.0	33.04
PGSC0003DMT400008621	Potato	mitochondrion	29.68	32.79
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	32.0	32.62
PGSC0003DMT400062862	Potato	cytosol	26.32	31.73
PGSC0003DMT400004842	Potato	plastid	28.42	31.32
PGSC0003DMT400016680	Potato	cytosol	29.26	31.17
PGSC0003DMT400040333	Potato	cytosol	27.79	30.63
PGSC0003DMT400068048	Potato	cytosol, plastid	29.05	30.46
PGSC0003DMT400017340	Potato	plastid	24.42	28.22
PGSC0003DMT400043704	Potato	plastid	24.63	26.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1AKN8	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400009600
PGSC:PGSC0003DMG400009600	EnsemblPlants:PGSC0003DMT400024834	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF213	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029666E4	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009600]

Coordinates

chr8:+:39665427..39666854

Molecular Weight (calculated)

54111.1 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.416

Length

475 amino acids

Sequence
(BLAST)

001: MEYYGKRSLH SYFDKERRSI QSPPRLSFNS HLKLSENHEV DHHLYSPSRS SNASAATMYS LMPPPSPDSP WTLSPLQTPS PSLLYHCIAS LHRHEGTIYS
101: IAVAKGIVFT GSESSRIRAW RQPDCIERGY LKASCGDVRS ILVYGNMLFT SHKDHKVRIW NVTVTDNFRG KKITTLPKST YYSFLKFSRS SRNNNNNQHK
201: DCISCMAYYH AEGLLYTGSW DKTVKAWRIS DNRCVDSFLA HEDNVNSIVV NQEDGCVFTC SSDGSIKIWR RVYGQNSHTL TMTLKFQPSP INALALSSNT
301: SNATCFLYSG SSDGFINFWE KEKSSGRFNH GGFLQGHRFS VLCLVAIEKL IFSGSEDTTI RVWRREEGSC FHECLAVLDA HRGPVKCLAA TLEIDKVVMG
401: FLVYSASLDQ TFKVWRIKVL PDHEEKVVNI ISSSEENIEQ LSEINRMKMT TEYELNPVLS PSWVEKKLEG RHHFH

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.