Factsheet for GSMUA_Achr10P01200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g03540.t01	Wine grape	cytosol	55.96	58.71
KRH52729	Soybean	cytosol	53.62	55.14
KRH62060	Soybean	cytosol	47.45	53.73
PGSC0003DMT400024834	Potato	cytosol	54.04	53.47
VIT_09s0002g04040.t01	Wine grape	nucleus	49.15	51.56
VIT_09s0002g04050.t01	Wine grape	cytosol	45.96	48.21
HORVU3Hr1G031720.2	Barley	cytosol	47.66	44.18
TraesCS3B01G182500.1	Wheat	cytosol	47.23	43.96
TraesCS3D01G163800.1	Wheat	cytosol	47.23	43.96
TraesCS3A01G156000.1	Wheat	cytosol	47.23	43.87
Zm00001d009003_P001	Maize	cytosol	48.09	43.46
Zm00001d039292_P001	Maize	cytosol	48.09	42.32
EES02188	Sorghum	cytosol	48.3	42.19
Os01t0232200-00	Rice	cytosol	45.96	41.14
GSMUA_Achr3P30740_001	Banana	cytosol	25.32	34.0
GSMUA_Achr6P36100_001	Banana	cytosol	27.02	32.32
GSMUA_Achr9P26470_001	Banana	nucleus	26.17	29.71
GSMUA_Achr7P08190_001	Banana	cytosol	20.85	29.7
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	22.77	28.69
GSMUA_Achr6P20880_001	Banana	cytosol	23.83	28.57
GSMUA_Achr11P...	Banana	cytosol	22.13	27.96
GSMUA_AchrUn_...	Banana	nucleus	23.4	27.64
GSMUA_Achr9P09670_001	Banana	plastid	21.49	27.45
GSMUA_Achr9P07610_001	Banana	nucleus	22.55	26.04
GSMUA_Achr2P17180_001	Banana	golgi	25.74	25.8
GSMUA_Achr7P19910_001	Banana	cytosol	23.83	25.45
GSMUA_Achr3P17140_001	Banana	cytosol	24.04	25.45
GSMUA_Achr6P34640_001	Banana	plastid	21.28	25.45
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	23.4	22.09
GSMUA_Achr8P28630_001	Banana	cytosol	21.91	20.04
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	25.53	18.75

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr10G01200_001	EnsemblPlants:GSMUA_Achr10P01200_001	EnsemblPlants:GSMUA_Achr10T01200_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0REE7	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF213	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002968A36	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative Uncharacterized WD repeat-containing protein alr3466 [Source:GMGC_GENE;Acc:GSMUA_Achr10G01200_001]

Coordinates

chr10:-:2130351..2131763

Molecular Weight (calculated)

52063.9 Da

IEP (calculated)

8.425

GRAVY (calculated)

-0.291

Length

470 amino acids

Sequence
(BLAST)

001: MDMYGKTSSR IYWEEDERGS QSPIQHHHHQ QSVKGQSPEA ELPRVSLSRL SSATVSSVSP LSPGPGSPWA LSPMRRFSSP SPTPSLMYHC LVSLQRHDGN
101: VYCVAVSGGT IYTGSDSDRV RVWKQPDCVD RGSIQTGHGR IRCILAHGST LVTTHKDHRV RIWAVPPVPD RLRCKKVATL PPRISSLFPF RKHRYQRHID
201: TISCLALHHA EGLLYTGSLD RTVKAWRLTE RACVDSFVAH DDQVSDIVVN ELDGCLFTSS IDGSVKLWRR VFGDSSHALM MVLRFQPSPV NALALSHSRD
301: TCFLYSGSSD GYVNIWEKEA VSGRYNHGGF LQGHRYAVLS LVAVNRVLLS GSEDTTIRVW RREKGSGFHR CLAVMEGHRG PVRCLAASVE VEGKGIGMGL
401: LVYSASLDRV VKAWRIKVLA EDDDDEAVTA VANDECGGSG VGKEATAEYE MNPVLSPTWV ELKLQKSYPF

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.