CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009003_P001	Maize	cytosol	83.83	86.73
Zm00001d039292_P001	Maize	cytosol	84.94	85.58
TraesCS3A01G156000.1	Wheat	cytosol	78.44	83.4
HORVU3Hr1G031720.2	Barley	cytosol	78.25	83.04
TraesCS3D01G163800.1	Wheat	cytosol	77.88	82.97
TraesCS3B01G182500.1	Wheat	cytosol	77.88	82.97
Os01t0232200-00	Rice	cytosol	74.72	76.57
GSMUA_Achr10P...	Banana	nucleus	42.19	48.3
VIT_04s0008g03540.t01	Wine grape	cytosol	39.78	47.77
KRH62060	Soybean	cytosol	35.32	45.78
KRH52729	Soybean	cytosol	38.66	45.51
PGSC0003DMT400024834	Potato	cytosol	39.22	44.42
VIT_09s0002g04040.t01	Wine grape	nucleus	36.25	43.53
VIT_09s0002g04050.t01	Wine grape	cytosol	34.39	41.29
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	27.51	30.45
OQU91330	Sorghum	mitochondrion	27.88	30.24
EES07284	Sorghum	cytosol	23.98	29.59
KXG34097	Sorghum	plastid	22.68	27.85
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	25.46	27.02
KXG26570	Sorghum	cytosol, plastid	21.19	24.2

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:C5XJM4	EnsemblPlants:EES02188	ProteinID:EES02188	ProteinID:EES02188.2
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250	GO:GO:0016020
GO:GO:0034220	GO:GO:0042807	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF213	SMART:SM00320
EnsemblPlantsGene:SORBI_3003G006500	SUPFAM:SSF50978	UniParc:UPI00081AB37C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:566650..568266

Molecular Weight (calculated)

56774.1 Da

IEP (calculated)

7.641

GRAVY (calculated)

-0.211

Length

538 amino acids

Sequence
(BLAST)

001: MDFGRRKSFS FFEEDRKSSS RPPGAHTPVH QYYARAGGGR RSPAREVAEP ARLSMSSAVP GGHGVEAMPL SPMQQMHAGA GAGSCSPWVQ SPLHGRLRFP
101: PSPAAIYHCL AALHRLEGDV HALAVARGVL FTASDSGRVR AWAAPGCFNR GYLDVGRGRV PALAACGGTL VTSHARDHRV RVWTVCAAAV CDHVRAKKAA
201: TLPAKSSILL HNPFGKRRQH QHRDTVSCLV LHAVAGLLYT GSHDHTVKAW RLADGSCVDS FVAHDGPVNA MVVNEADGCV FTGSADGTVK MWRRVYGGTA
301: HALIIVLRSE LSPVNALALC HAHAAGGGAR RCFLYAGSSD GYVNVWEKEA TVGRPAHAGY LKGHRLAVFC LASGCGGRVV VSGSEDATMR VWRREGISKG
401: GGGGAAHTCL AVIEGHRGPV RCLAVGGGEA GEVEGSMVVY SAGLDKSVKV WRIRVVGKED EEDDDDELDG DDGGEDDDDP EAAAEILMAG GGKADGGDAH
501: AHAHAIPVVE DTEEPEFVGP TPVLSPVWVE KRRHTSRG

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.