CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0738700-01	Rice	plasma membrane	88.89	88.34
TraesCS5D01G389000.1	Wheat	cytosol	85.19	87.16
TraesCS5A01G379200.1	Wheat	cytosol	85.39	87.0
TraesCS5B01G382700.1	Wheat	cytosol	84.98	86.95
HORVU5Hr1G093830.1	Barley	cytosol	85.19	86.43
GSMUA_Achr3P30740_001	Banana	cytosol	44.86	62.29
AT1G47610.1	Thale cress	cytosol	44.03	60.97
VIT_18s0001g11600.t01	Wine grape	nucleus	57.2	60.96
Bra015611.1-P	Field mustard	cytosol	45.27	60.61
CDY06729	Canola	cytosol	45.06	60.33
CDY70402	Canola	cytosol	44.24	59.39
CDY48182	Canola	nucleus	53.7	58.13
Bra034310.1-P	Field mustard	nucleus	53.7	58.13
CDX77053	Canola	cytosol	53.5	57.91
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	44.03	57.37
Bra007751.1-P	Field mustard	nucleus	53.09	57.33
PGSC0003DMT400008621	Potato	mitochondrion	49.79	56.28
KRH15278	Soybean	cytosol	41.98	56.04
AT2G26490.1	Thale cress	cytosol	53.5	55.91
Solyc07g025140.2.1	Tomato	cytosol	50.82	55.88
Solyc04g079700.2.1	Tomato	cytosol	51.03	55.86
CDX76704	Canola	cytosol	53.29	55.7
CDY11480	Canola	cytosol	53.29	55.7
PGSC0003DMT400016680	Potato	cytosol	51.03	55.61
PGSC0003DMT400039941	Potato	cytosol	45.88	54.79
Solyc12g088980.1.1	Tomato	cytosol	45.68	54.68
KRH05757	Soybean	nucleus	51.65	53.86
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	46.3	45.18
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	44.86	43.0
OQU91330	Sorghum	mitochondrion	43.62	42.74
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	49.59	37.66
KXG34097	Sorghum	plastid	29.84	33.1
EES07284	Sorghum	cytosol	29.63	33.03
KXG26570	Sorghum	cytosol, plastid	29.01	29.94
EES02188	Sorghum	cytosol	30.45	27.51

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8060501	UniProt:C5X1B1	EnsemblPlants:EER93490	ProteinID:EER93490
ProteinID:EER93490.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G097000	SUPFAM:SSF50978	unigene:Sbi.13061
UniParc:UPI0001A82701	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002466492.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:7456851..7458311

Molecular Weight (calculated)

51584.0 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.388

Length

486 amino acids

Sequence
(BLAST)

001: MKDSDGEGAG GGVARSHPSN LPLPAPQSDP NLQYSGGTDD ESSNRNSSSS ATGGASPGYY SDYPSSFSGE CSPYNMSPWN QTMASPWSHH SEASAAGLGG
101: AAPTMAPGTS LISSLVREEG HIYSLAAKGD TLYTGSDSKN IRVWRKQKDS GGFKSSSGLV KAIVISGERI FTGHQDGKIR VWKVSPKNGM HKRVGSLPRL
201: RDFLRGSLNP SNYVEVRKNR SALWIRHSDA VSCLSPTDPS QGFLYSGSWD RTFKVWRISD SKCLESVVAH DDNVNSIVAA FDGLVFTGSA DGTVKVWRRE
301: QQGKGTKHTA VQTLLKQEHA VNALAVSAVA PVLYCGSSDG LVNFWEGERH LVHGGVLRGH KKAVFCLAAA GALLLSGSAD NTIHVWRRDG GVHACLSVLT
401: GHTEPIRCIA VVEDNGENGG ESTAGGGSSS ASRWIVYTGS LDKSIKVWRV TDEPPDPLLG AGDAPQIFDR YPGDAFGASA STTSFR

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.