Factsheet for TraesCS5D01G389000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G379200.1	Wheat	cytosol	99.79	99.37
TraesCS5B01G382700.1	Wheat	cytosol	99.37	99.37
HORVU5Hr1G093830.1	Barley	cytosol	98.53	97.7
Os03t0738700-01	Rice	plasma membrane	87.79	85.28
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	87.16	85.19
AT1G47610.1	Thale cress	cytosol	45.89	62.11
GSMUA_Achr3P30740_001	Banana	cytosol	45.68	62.0
Bra015611.1-P	Field mustard	cytosol	47.37	61.98
CDY06729	Canola	cytosol	47.16	61.71
CDY70402	Canola	cytosol	46.32	60.77
VIT_18s0001g11600.t01	Wine grape	nucleus	57.47	59.87
CDY48182	Canola	nucleus	54.53	57.68
Bra034310.1-P	Field mustard	nucleus	54.53	57.68
CDX77053	Canola	cytosol	54.32	57.46
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	44.84	57.1
Bra007751.1-P	Field mustard	nucleus	53.89	56.89
Solyc04g079700.2.1	Tomato	cytosol	52.21	55.86
PGSC0003DMT400008621	Potato	mitochondrion	50.32	55.58
AT2G26490.1	Thale cress	cytosol	54.32	55.48
Solyc07g025140.2.1	Tomato	cytosol	51.58	55.43
CDX76704	Canola	cytosol	54.11	55.27
CDY11480	Canola	cytosol	54.11	55.27
KRH15278	Soybean	cytosol	42.11	54.95
KRH05757	Soybean	nucleus	53.89	54.94
PGSC0003DMT400016680	Potato	cytosol	51.37	54.71
PGSC0003DMT400039941	Potato	cytosol	46.32	54.05
Solyc12g088980.1.1	Tomato	cytosol	46.11	53.94
TraesCS5D01G074900.1	Wheat	cytosol	46.53	49.11
TraesCS4D01G071100.1	Wheat	plastid	47.16	47.16
TraesCS4D01G071000.1	Wheat	plastid	46.11	45.25
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	46.95	44.78
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	49.47	36.72
TraesCS3D01G480400.1	Wheat	plastid	28.84	32.01
TraesCS2D01G338900.1	Wheat	plastid	27.37	29.41
TraesCS3D01G163800.1	Wheat	cytosol	30.32	28.51
TraesCS7D01G196700.1	Wheat	cytosol	29.68	28.37

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G389000
EnsemblPlants:TraesCS5D01G389000.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:458454014..458455441

Molecular Weight (calculated)

50820.4 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.353

Length

475 amino acids

Sequence
(BLAST)

001: MRDSDGEGAG GGVPRSHPSN IPLPMSHSDP NYSGTDDECS NRQSSSSATG GFYNDYPSSF SGECSPYNMS PWNQTMASPW SHHSEASMAA PAMAPGTSLI
101: SSLVREEGHI YSLAAKGDAL YTGSDSKNIR VWRKQKDSGG FKSSSGLVKA IVISGERIFT GHQDGKIRVW KVSPKNGLHK RVGSLPRLRD FLRGSLNPSN
201: YVEVRKNRSA LWIRHSDAVS CLSPTDAGQG LLYSGSWDRT FKVWRISDSK CLESVVAHDD NVNAIVAAYD GLVFTGSADG TVKVWKREVQ GKGTKHSPVQ
301: TLLKQEHAVN ALAVSAVAPV LYCGSSDGLV NCWEGDSKLV HGGVLRGHKK AVFCLAAAGA LLFSGSADNT IMVWRRDAGV HSCLSVLSGH TEPIRCLAVV
401: EYNKENVAAA AAETGDNSGV GRWIVYSGSL DKSIKVWRVT DEPADTLLGG PGEGSQMFDR YPGDPFGASS STSFR

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.