Factsheet for GSMUA_Achr4P07470_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	53.41	71.31
GSMUA_Achr3P30740_001	Banana	cytosol	42.97	61.14
AT1G47610.1	Thale cress	cytosol	35.14	49.86
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	63.45	49.38
Bra015611.1-P	Field mustard	cytosol	35.94	49.31
CDY06729	Canola	cytosol	35.94	49.31
CDY70402	Canola	cytosol	35.54	48.9
VIT_18s0001g11600.t01	Wine grape	nucleus	43.37	47.37
Os03t0738700-01	Rice	plasma membrane	46.39	47.24
TraesCS5D01G389000.1	Wheat	cytosol	44.78	46.95
TraesCS5B01G382700.1	Wheat	cytosol	44.58	46.74
TraesCS5A01G379200.1	Wheat	cytosol	44.58	46.54
HORVU5Hr1G093830.1	Barley	cytosol	44.58	46.35
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	45.18	46.3
GSMUA_Achr6P20880_001	Banana	cytosol	35.74	45.41
GSMUA_AchrUn_...	Banana	nucleus	34.34	42.96
GSMUA_Achr7P08190_001	Banana	cytosol	28.31	42.73
KRH15278	Soybean	cytosol	31.12	42.58
CDX77053	Canola	cytosol	38.35	42.54
PGSC0003DMT400008621	Potato	mitochondrion	36.55	42.33
CDY48182	Canola	nucleus	38.15	42.32
Bra034310.1-P	Field mustard	nucleus	38.15	42.32
Bra007751.1-P	Field mustard	nucleus	38.15	42.22
GSMUA_Achr9P09670_001	Banana	plastid	31.12	42.12
AT2G26490.1	Thale cress	cytosol	38.96	41.72
Solyc07g025140.2.1	Tomato	cytosol	36.95	41.63
Solyc04g079700.2.1	Tomato	cytosol	36.95	41.44
CDX76704	Canola	cytosol	38.55	41.29
CDY11480	Canola	cytosol	38.55	41.29
PGSC0003DMT400016680	Potato	cytosol	36.35	40.58
GSMUA_Achr9P26470_001	Banana	nucleus	33.73	40.58
KRH05757	Soybean	nucleus	37.95	40.56
Solyc12g088980.1.1	Tomato	cytosol	32.73	40.15
PGSC0003DMT400039941	Potato	cytosol	32.73	40.05
GSMUA_Achr6P34640_001	Banana	plastid	30.12	38.17
GSMUA_Achr2P17180_001	Banana	golgi	35.54	37.74
GSMUA_Achr6P36100_001	Banana	cytosol	24.5	31.04
GSMUA_Achr11P...	Banana	cytosol	22.49	30.11
GSMUA_Achr9P07610_001	Banana	nucleus	22.49	27.52
GSMUA_Achr3P17140_001	Banana	cytosol	24.1	27.03
GSMUA_Achr7P19910_001	Banana	cytosol	23.09	26.14
GSMUA_Achr10P...	Banana	nucleus	22.09	23.4
GSMUA_Achr8P28630_001	Banana	cytosol	22.49	21.79

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr4G07470_001	EnsemblPlants:GSMUA_Achr4P07470_001	EnsemblPlants:GSMUA_Achr4T07470_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0SLW4	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PFscan:PS51257
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296A942	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Putative F-box/WD repeat-containing protein sel-10 [Source:GMGC_GENE;Acc:GSMUA_Achr4G07470_001]

Coordinates

chr4:-:5524493..5528144

Molecular Weight (calculated)

53684.2 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.007

Length

498 amino acids

Sequence
(BLAST)

001: MKISFVLLEF DMWACLVMCI NYSLLVGCLR PCAIHLRDVL SSPHVSIYTT AVVSALLRSS PSPHLLFIYT SRPLVRQPLL LSNPACPISS SCHIFSFCWS
101: SLSFLPRSIS KSIYIRKGSM REGGGSSGGS GHSAAMYADR PMPHSDQLMH QSSADEDSFM RHSSSSTTAS SGFYSDYPMA MSGESSPFIM SPWHQSSPHP
201: ANDPAFADAA AGLPFTGLIS SLKDFAGFKS SSGLVKAIVI AADRIFTGHQ DGKIRVWRVS PKSAAVHKRI GSLPRLKDVI RSSLKPSNYV EVRRHRSALW
301: IRHSDAISCL CLDEDQGLLY SSSWDKTFKV WRISDSRCLE SVIAHDDAVN SVVTAFGGLV FTGSADGTVK VWRRELQGEG QLSHGGVLRG HKMAVLCLAA
401: AGSLLLSGSA DKNICVWRRE GTVHNCLSVL SGHSGPVKCL AIVTDTGGEE GGRGGAAASW IVYSGSLDKS VKVWRVSEQS PEALLRAPQT GAYGGRAE

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.