Factsheet for GSMUA_Achr9P07610_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17140_001	Banana	cytosol	76.17	69.82
GSMUA_Achr8P28630_001	Banana	cytosol	71.99	57.0
Bra032795.1-P	Field mustard	cytosol	41.03	54.05
KRH57169	Soybean	cytosol, plasma membrane	39.31	46.92
CDY51591	Canola	cytosol, mitochondrion	46.93	45.69
Bra012504.1-P	Field mustard	cytosol, mitochondrion	46.68	45.45
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	44.23	45.0
CDY03879	Canola	cytosol, mitochondrion	46.19	44.98
CDX84954	Canola	plastid	46.44	44.79
AT1G24530.1	Thale cress	cytosol, plastid	45.7	44.5
CDY24427	Canola	plastid	45.7	44.08
CDY36134	Canola	plastid	45.7	44.08
GSMUA_Achr6P36100_001	Banana	cytosol	42.51	44.02
VIT_01s0137g00360.t01	Wine grape	cytosol	46.68	43.98
Bra010967.1-P	Field mustard	cytosol, plastid	45.45	43.84
Zm00001d025699_P001	Maize	plastid	48.4	43.58
Zm00001d003272_P001	Maize	cytosol, plastid	47.91	43.24
TraesCS2D01G338900.1	Wheat	plastid	46.93	43.21
KRH43090	Soybean	plastid	45.7	43.16
CDY27587	Canola	plastid	45.95	42.99
TraesCS2B01G358100.1	Wheat	plastid	46.44	42.28
Solyc05g013880.1.1	Tomato	cytosol, plastid	43.98	42.12
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	46.44	42.09
KXG26570	Sorghum	cytosol, plastid	48.65	42.04
TraesCS2A01G324000.1	Wheat	plastid	45.7	41.99
PGSC0003DMT400043704	Potato	plastid	44.47	41.51
KRH03884	Soybean	cytosol	38.08	41.22
GSMUA_Achr7P19910_001	Banana	cytosol	44.47	41.14
Solyc03g111780.1.1	Tomato	cytosol	37.1	37.66
Os04t0481600-00	Rice	cytosol	46.68	36.75
GSMUA_Achr7P08190_001	Banana	cytosol	26.29	32.42
GSMUA_Achr3P30740_001	Banana	cytosol	26.54	30.86
GSMUA_Achr11P...	Banana	cytosol	26.78	29.3
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	26.29	28.69
GSMUA_Achr9P09670_001	Banana	plastid	23.83	26.36
GSMUA_Achr9P26470_001	Banana	nucleus	26.54	26.09
GSMUA_Achr6P20880_001	Banana	cytosol	25.06	26.02
GSMUA_Achr2P17180_001	Banana	golgi	29.73	25.8
GSMUA_AchrUn_...	Banana	nucleus	25.06	25.63
GSMUA_Achr6P34640_001	Banana	plastid	24.08	24.94
GSMUA_Achr10P...	Banana	nucleus	26.04	22.55
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	27.52	22.49
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	28.75	18.28

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr9G07610_001	EnsemblPlants:GSMUA_Achr9P07610_001	EnsemblPlants:GSMUA_Achr9T07610_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TYC0	PFAM:PF00400	PFAM:PF13570	InterPro:PQQ-like_dom	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296C330
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Putative Uncharacterized WD repeat-containing protein alr2800 [Source:GMGC_GENE;Acc:GSMUA_Achr9G07610_001]

Coordinates

chr9:-:4860250..4861585

Molecular Weight (calculated)

43976.1 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.169

Length

407 amino acids

Sequence
(BLAST)

001: MSLCLPSSTE DDAASVGTLP SLPSLQSVVP IYNYPDSVRC SASHLCLSSI KALTSSSSAA ALAVSATSSF LYSASESEIT VFDLVSARPV ETFAGVPSAG
101: FVKSVALSPD GRLFTAHQDG RIRAWRRSVR SGRHRLDATL PTVADRLRRL PLPGNYVAVR RHKKRLWVEH ADAVSAVAFR EGLLYSVSWD KTLKVWRGGS
201: DFRCLESVPA HEDAANAVAV AGDGTVYTGS ADGRIRAWTR SLVEEGRRRR HRLVATLERH RSAVNALALS GDGAVLYSGA CDRSILVWER EESAGHMAVA
301: GALRGHRKAI LCLACVDDVL FSGSSDRTVR IWRREGEGKG YACLGVIQGH VAGVRSLVAV RVDSGKEDKD DEYRVCSGSL DGEVRIWRVR ISATKESGPD
401: VKNTKTN

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.