Factsheet for PGSC0003DMT400043704

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013880.1.1	Tomato	cytosol, plastid	92.89	95.29
Bra032795.1-P	Field mustard	cytosol	43.58	61.49
VIT_01s0137g00360.t01	Wine grape	cytosol	56.19	56.71
CDY51591	Canola	cytosol, mitochondrion	52.52	54.78
Bra012504.1-P	Field mustard	cytosol, mitochondrion	52.29	54.55
KRH43090	Soybean	plastid	53.9	54.52
CDY24427	Canola	plastid	52.75	54.5
CDY03879	Canola	cytosol, mitochondrion	52.06	54.31
CDX84954	Canola	plastid	52.29	54.03
AT1G24530.1	Thale cress	cytosol, plastid	51.38	53.59
CDY36134	Canola	plastid	51.83	53.55
Bra010967.1-P	Field mustard	cytosol, plastid	51.61	53.32
CDY27587	Canola	plastid	51.83	51.95
GSMUA_Achr9P07610_001	Banana	nucleus	41.51	44.47
GSMUA_Achr3P17140_001	Banana	cytosol	44.04	43.24
PGSC0003DMT400040333	Potato	cytosol	42.2	42.69
PGSC0003DMT400062862	Potato	cytosol	38.07	42.13
PGSC0003DMT400004842	Potato	plastid	38.99	39.44
GSMUA_Achr8P28630_001	Banana	cytosol	42.2	35.8
TraesCS2D01G338900.1	Wheat	plastid	35.55	35.07
TraesCS2A01G324000.1	Wheat	plastid	35.55	34.99
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	35.78	34.74
Zm00001d003272_P001	Maize	cytosol, plastid	35.78	34.59
Zm00001d025699_P001	Maize	plastid	35.78	34.51
TraesCS2B01G358100.1	Wheat	plastid	35.09	34.23
KXG26570	Sorghum	cytosol, plastid	36.47	33.76
PGSC0003DMT400017340	Potato	plastid	30.28	32.12
PGSC0003DMT400039941	Potato	cytosol	29.82	31.94
PGSC0003DMT400016680	Potato	cytosol	31.42	30.72
PGSC0003DMT400008621	Potato	mitochondrion	30.05	30.47
Os04t0481600-00	Rice	cytosol	35.55	29.98
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	31.65	29.61
PGSC0003DMT400026153	Potato	nucleus	31.19	29.57
PGSC0003DMT400059001	Potato	extracellular	29.59	28.1
PGSC0003DMT400068048	Potato	cytosol, plastid	27.75	26.71
PGSC0003DMT400024834	Potato	cytosol	26.83	24.63

Protein Annotations

EntrezGene:102601999	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1BF37	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400016973	PGSC:PGSC0003DMG400016973
EnsemblPlants:PGSC0003DMT400043704	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF199
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296D9D3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_006341793.1	SEG:seg	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016973]

Coordinates

chr5:-:10930199..10931820

Molecular Weight (calculated)

47451.7 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.075

Length

436 amino acids

Sequence
(BLAST)

001: MKFRSWISSS SSVNTAIDHP VPPPKGLFPD DASNFSDLPS STTSPSLFSQ ETNSLSSLQS NLSLLTLPSV PSLQNLSPGT LNLAISARCL NSLNPRNAHV
101: TFLAMHNNLL YAASSNEINV FELTNFTLID TFNNKDPSSG FAKSVTFLDG KIFTAHQDCK IRVWKLTPMK QHNLIATLPT LEDRLRRFVF PSSYTNVRRH
201: KKKMWIEHHD AVSGLAVNEN LMCSVSWDRC LKIWGGSKLR CIESIKAHDD AINAVVVGKD GTIFTGSADK RIRVWGKPYA EKKGKIGLIA TLEKHKSAVN
301: ALALSSDESV LFSGACDRSI LVWEREDSAN YMVVTGALRG HTKAILCLIN VSDLLFSGSA DRTVRIWTRG NQGQFCCLTV LDGHRTPVRS LVAAPAVAAE
401: SGGANGGVKL FSGSFDGEIK VWQIVVSSSS GSPLIS

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.