Factsheet for PGSC0003DMT400040333

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006340.2.1	Tomato	cytosol	89.56	93.01
PGSC0003DMT400004842	Potato	plastid	63.34	63.34
VIT_01s0026g00880.t01	Wine grape	cytosol	61.72	62.3
CDY16242	Canola	plastid	54.76	57.7
AT1G24130.1	Thale cress	cytosol, plastid	55.45	57.59
CDY14665	Canola	plastid	54.29	57.49
KRH74694	Soybean	nucleus	57.54	57.27
Bra024637.1-P	Field mustard	plastid	54.06	57.11
KRH69465	Soybean	nucleus	57.08	56.04
PGSC0003DMT400062862	Potato	cytosol	48.26	52.79
GSMUA_Achr6P36100_001	Banana	cytosol	43.39	47.58
Zm00001d017994_P001	Maize	cytosol	35.73	43.26
Os02t0740900-01	Rice	plastid	40.37	42.75
GSMUA_Achr7P19910_001	Banana	cytosol	43.39	42.5
HORVU7Hr1G039810.1	Barley	plastid	37.82	42.45
TraesCS7B01G100800.1	Wheat	cytosol	37.82	42.23
PGSC0003DMT400043704	Potato	plastid	42.69	42.2
EES07284	Sorghum	cytosol	41.07	40.6
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	37.12	40.1
PGSC0003DMT400039941	Potato	cytosol	33.64	35.63
PGSC0003DMT400008621	Potato	mitochondrion	33.87	33.95
PGSC0003DMT400016680	Potato	cytosol	35.03	33.86
PGSC0003DMT400017340	Potato	plastid	32.25	33.82
TraesCS7D01G196700.1	Wheat	cytosol	38.28	33.2
TraesCS7A01G195200.1	Wheat	cytosol	37.82	32.73
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	34.57	31.97
PGSC0003DMT400026153	Potato	nucleus	33.18	31.09
PGSC0003DMT400059001	Potato	extracellular	32.25	30.28
PGSC0003DMT400024834	Potato	cytosol	30.63	27.79
PGSC0003DMT400068048	Potato	cytosol, plastid	28.07	26.71

Protein Annotations

EntrezGene:102600182	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1B9R4	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400015613	PGSC:PGSC0003DMG400015613	EnsemblPlants:PGSC0003DMT400040333	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029507CB	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006355927.1	SEG:seg	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015613]

Coordinates

chr5:+:6964731..6966929

Molecular Weight (calculated)

47528.2 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.259

Length

431 amino acids

Sequence
(BLAST)

001: MGKIPCPLPF QSKQKSINSD QFHPIYSDLS SSSSLSLSRS SSSLYSQPSL PSVPSLTPLS THSELLSNTF CASTFTGLSS SVFCLSLAGK HLYTGTSNGE
101: IRLRNKDPLN QEKNYSIVVA QKQSKSSVKS IVIFGDKLFT AHQDHKIRVW KIDNHDDDIE ASNQNYYKCI ATLPTLNDRC MRLFSAKNYV EVRRHKKCTW
201: VHHVDTVSAL AISSDNSLLY SASWDRTFKI WRISDFKCLE SVWNAHDDAI NAIALSKNGY VYTGSADMKI KIWKKEQGEK SIHTLIATLE KHKSSVNALA
301: LSTDDSVLYS GACDRSIIVW EKDSGGDKMV VSGALRGHTK AILCLCVVDD LVVSGSADKT VRIWKKGIGK SYSCLAVLEG HNGPVKCLTA SFSNSNSNSN
401: SNSNDFGCGN SYVVYSGSLD CDIKVWKIWV P

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.