CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69465	Soybean	nucleus	85.45	84.28
VIT_01s0026g00880.t01	Wine grape	cytosol	61.43	62.3
KRH57017	Soybean	plastid	53.35	58.63
Solyc05g006340.2.1	Tomato	cytosol	55.89	58.31
CDY14665	Canola	plastid	54.73	58.23
AT1G24130.1	Thale cress	cytosol, plastid	55.43	57.83
PGSC0003DMT400040333	Potato	cytosol	57.27	57.54
Bra024637.1-P	Field mustard	plastid	54.04	57.35
CDY16242	Canola	plastid	54.04	57.21
KRH54449	Soybean	plastid	55.43	57.01
KRH63468	Soybean	plastid	54.04	55.98
PGSC0003DMT400004842	Potato	plastid	55.2	55.45
KRH03365	Soybean	nucleus, plastid	51.96	55.42
Solyc04g005020.2.1	Tomato	plastid	54.73	55.24
GSMUA_Achr6P36100_001	Banana	cytosol	44.57	49.11
Os02t0740900-01	Rice	plastid	42.49	45.21
Zm00001d017994_P001	Maize	cytosol	36.03	43.82
EES07284	Sorghum	cytosol	43.88	43.58
HORVU7Hr1G039810.1	Barley	plastid	38.57	43.49
GSMUA_Achr7P19910_001	Banana	cytosol	43.88	43.18
TraesCS7B01G100800.1	Wheat	cytosol	38.34	43.01
KRH43090	Soybean	plastid	42.73	42.92
KRH57169	Soybean	cytosol, plasma membrane	33.49	42.52
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	37.88	41.1
KRH03884	Soybean	cytosol	32.79	37.77
TraesCS7D01G196700.1	Wheat	cytosol	39.26	34.21
KRH15278	Soybean	cytosol	28.41	33.79
TraesCS7A01G195200.1	Wheat	cytosol	38.8	33.73
KRH05757	Soybean	nucleus	36.26	33.69
KRH39863	Soybean	cytosol, plastid	32.33	33.65
KRH28540	Soybean	nucleus	34.18	32.31
KRH76925	Soybean	nucleus	34.18	32.17
KRH52729	Soybean	cytosol	29.1	27.57
KRH62060	Soybean	cytosol	25.64	26.75
KRH23424	Soybean	plastid	25.87	25.4
KRH09907	Soybean	cytosol, plastid	13.16	21.84
KRH24543	Soybean	cytosol, nucleus	30.25	17.35

Protein Annotations

EntrezGene:100778775	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02000062	EnsemblPlantsGene:GLYMA_01G036800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1J5E9	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH74694	ProteinID:KRH74694	ProteinID:KRH74694.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023370E9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:3916138..3918004

Molecular Weight (calculated)

47926.7 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.401

Length

433 amino acids

Sequence
(BLAST)

001: MGLLQRPLCC HTQQPQSHHH LHSESSTSSS LSSQPSLPSV PSLTPQKPHF LEEQPQTTHH RLITAVKGHT SPIFSLALHG KSLYSASSGG EIRACNRNPT
101: SANDIITLKY ISNVNTNTVV ATSNAPIKSL IVSHDKLFTA HQDHKIRVWK TTTDQPGNNN NNNPNYYKCV ATLPTLHDRI SKLFSSKNYV EIRRHKKRTW
201: VHHVDTVSAL ALSRDGSLLY SASWDRTFKI WRTSDFKCLE SVKNAHEDAI NSLVLSNNGF VYTGSADTRI KMWKKLEGEK KHSLIGTLEK HKSAVNALAL
301: NSDGSVLYSG ACDRSILVWE SDQNENNNTM VLVGALRGHT KAILCLVVVA DLVCSGSADN SVRVWRRGAE KSYSCLAVFE GHRRPVKCLA MAVDSNSGGP
401: REDDHNSSSY LVYSAGLDCE IKVWQIRVPS LSL

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.