CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76925	Soybean	nucleus	92.36	91.96
Solyc02g090150.1.1	Tomato	nucleus	55.02	55.75
PGSC0003DMT400026153	Potato	nucleus	55.9	55.65
VIT_07s0255g00110.t01	Wine grape	nucleus	60.04	55.22
Solyc03g044830.2.1	Tomato	nucleus	53.93	54.05
PGSC0003DMT400059001	Potato	extracellular	54.15	54.03
KRH05757	Soybean	nucleus	53.93	53.0
KRH15278	Soybean	cytosol	41.92	52.75
CDY02088	Canola	cytosol, mitochondrion, nucleus	51.75	52.2
CDY23013	Canola	cytosol	51.75	52.09
Bra036080.1-P	Field mustard	cytosol	51.97	51.63
CDY17780	Canola	cytosol	51.75	51.41
AT3G50390.1	Thale cress	cytosol	52.62	51.39
CDY52834	Canola	cytosol	51.75	51.3
Bra012903.1-P	Field mustard	cytosol	51.75	51.08
KRH57169	Soybean	cytosol, plasma membrane	27.29	36.66
KRH57017	Soybean	plastid	29.91	34.77
KRH39863	Soybean	cytosol, plastid	31.22	34.38
KRH74694	Soybean	nucleus	32.31	34.18
KRH63468	Soybean	plastid	30.35	33.25
KRH03884	Soybean	cytosol	27.07	32.98
KRH03365	Soybean	nucleus, plastid	29.04	32.76
KRH69465	Soybean	nucleus	31.0	32.35
KRH54449	Soybean	plastid	29.48	32.07
KRH52729	Soybean	cytosol	31.44	31.51
KRH62060	Soybean	cytosol	28.38	31.33
KRH43090	Soybean	plastid	29.48	31.32
KRH24543	Soybean	cytosol, nucleus	47.38	28.74
KRH23424	Soybean	plastid	25.98	26.98
KRH09907	Soybean	cytosol, plastid	13.76	24.14

Protein Annotations

EntrezGene:100819990	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02006756	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_11G060400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K7LNA2	EnsemblPlants:KRH28540	ProteinID:KRH28540	ProteinID:KRH28540.1	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233D149	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:4556602..4558590

Molecular Weight (calculated)

51009.4 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.517

Length

458 amino acids

Sequence
(BLAST)

001: MTGSSRKGRG YLDEGSVNGR MYGKLKKDEF DGYNSDNHQR KNNPITMDAP HLDPQMEADN APYDASLSPL SKSPWSSHMN EDAFAGSNEN DALVGSLVRE
101: EGHIYSLAAT KDLLYTGSDS KNIRVWKNQE EFAGFKSNSG LVKAIVIAGE KILTGHQDGR IRVWKVSGKN DQQHKRVATL PTLRNYIKCS MKPSNYVEVR
201: RRRNLIWIKH YDAISCLSLT EDHSLIYSAS WDKTFKVWRT SNFKCLESVT AHDDAVNALV VGLDGMVFTG SADGTVKIWR REVQGKGTKH LFSQTLLKQE
301: CAVTALAINE EGNVLYAGSS DGLVNYWVRE TNLEHKGVLR GHKLAVLCLA TAGSLVFSGS ADMAICVWKR SLNDDHTCVN ILSGHTGPVK CLAAERDPEA
401: MCNERRWILY SGSLDKSVKV WKVSENAASA HNNHQPPRPS LDQFPRVSSL RKMGSKRY

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.