Factsheet for PGSC0003DMT400059001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044830.2.1	Tomato	nucleus	95.42	95.84
PGSC0003DMT400026153	Potato	nucleus	71.02	70.87
VIT_07s0255g00110.t01	Wine grape	nucleus	63.18	58.23
PGSC0003DMT400039941	Potato	cytosol	50.33	56.76
PGSC0003DMT400016680	Potato	cytosol	53.16	54.71
PGSC0003DMT400008621	Potato	mitochondrion	50.76	54.19
KRH28540	Soybean	nucleus	54.03	54.15
KRH76925	Soybean	nucleus	54.03	53.91
CDY02088	Canola	cytosol, mitochondrion, nucleus	52.72	53.3
CDY23013	Canola	cytosol	52.72	53.19
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	53.16	52.36
Bra036080.1-P	Field mustard	cytosol	52.51	52.28
CDY17780	Canola	cytosol	52.51	52.28
AT3G50390.1	Thale cress	cytosol	53.38	52.24
Bra012903.1-P	Field mustard	cytosol	52.72	52.16
CDY52834	Canola	cytosol	52.29	51.95
PGSC0003DMT400062862	Potato	cytosol	29.19	34.01
PGSC0003DMT400017340	Potato	plastid	29.85	33.33
PGSC0003DMT400004842	Potato	plastid	30.5	32.48
PGSC0003DMT400024834	Potato	cytosol	33.55	32.42
PGSC0003DMT400040333	Potato	cytosol	30.28	32.25
PGSC0003DMT400043704	Potato	plastid	28.1	29.59
PGSC0003DMT400068048	Potato	cytosol, plastid	28.32	28.7

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1C3M4	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400022914
PGSC:PGSC0003DMG400022914	EnsemblPlants:PGSC0003DMT400059001	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002967991	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022914]

Coordinates

chr3:+:9527793..9530092

Molecular Weight (calculated)

51116.0 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.412

Length

459 amino acids

Sequence
(BLAST)

001: MAMEDQSSVP RRQTFGSMLQ SDPNHDQDEY INFRTSNTSD QSGLANYDHN HRASRLSSDY NMMISPSPSE ECYSLSSTPY IAPSMDLTSS PLSKSPWSSH
101: VESYLYTGLI GSLVREEGHI YSLAASGDLL YTGSDSKNIR IWKNQKEFAG FKSNSGLVKA IIISGERIFT GHQDGKVRVW KVSPNDPNVY RRIGTLPTLK
201: AYIKSSMNPN NYVEVRRNRN SVWIRHFDAI SSLSMSEDQN LLYSASWDKT IKVWRSSDFK CLESISAHED AVNSVVVGFD GLIFSGSADG TVKVWRRELQ
301: GNKTKHFFSQ TLLNQECAVT SLVVDPSSNF LYCGSSDGFV NFWERAKFLS HGGVLRGHKS AVLCLATAGN LVFSGSADTN ICVWRREGCD HICLSVLKGH
401: SGPVKCMAVE EDHGPTINGD RQFIVYSGSL DKSVKIWRVS PCPPHMQAQL QHQSQWGTS

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.