Factsheet for Bra012903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02088	Canola	cytosol, mitochondrion, nucleus	97.63	99.78
Bra036080.1-P	Field mustard	cytosol	78.45	78.96
AT3G50390.1	Thale cress	cytosol	78.02	77.19
Bra015611.1-P	Field mustard	cytosol	43.75	55.92
Bra037545.1-P	Field mustard	cytosol	44.4	55.38
VIT_07s0255g00110.t01	Wine grape	nucleus	58.84	54.82
Solyc02g090150.1.1	Tomato	nucleus	53.02	54.42
PGSC0003DMT400026153	Potato	nucleus	53.88	54.35
Solyc03g044830.2.1	Tomato	nucleus	51.94	52.74
PGSC0003DMT400059001	Potato	extracellular	52.16	52.72
KRH28540	Soybean	nucleus	51.08	51.75
KRH76925	Soybean	nucleus	51.08	51.52
Bra034310.1-P	Field mustard	nucleus	48.71	50.33
Bra007751.1-P	Field mustard	nucleus	48.71	50.22
Bra022372.1-P	Field mustard	cytosol	44.83	45.41
Bra001728.1-P	Field mustard	nucleus	44.4	44.88
Bra014189.1-P	Field mustard	nucleus	44.61	44.33
Bra011525.1-P	Field mustard	cytosol	45.69	44.26
Bra034622.1-P	Field mustard	cytosol	45.91	43.56
Bra017646.1-P	Field mustard	cytosol	45.47	43.15
Bra032795.1-P	Field mustard	cytosol	26.29	39.48
Bra024637.1-P	Field mustard	plastid	31.68	36.03
Bra000611.1-P	Field mustard	nucleus	29.53	35.22
Bra033466.1-P	Field mustard	cytosol, plastid	30.6	33.49
Bra006883.1-P	Field mustard	plastid	30.6	33.49
Bra012504.1-P	Field mustard	cytosol, mitochondrion	28.45	31.58
Bra010967.1-P	Field mustard	cytosol, plastid	27.8	30.57

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra012903	EnsemblPlants:Bra012903.1	EnsemblPlants:Bra012903.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4D8U3	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002540650	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT3G50390 (E=4e-178) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:+:21619860..21621254

Molecular Weight (calculated)

50826.6 Da

IEP (calculated)

7.593

GRAVY (calculated)

-0.448

Length

464 amino acids

Sequence
(BLAST)

001: MHHKASSRDT NSQNFPKLKS VETDPDPDIY DITYVDVSPS VGSTSPLSKS PWIAHVDPTD LEPPHSGIKS TANTREPKNY SPNILMGSLF REEGHIYSLA
101: TSGDLLYTGS DSKNIRVWKN QTEFSSFKSN SGLVKAIVLA GDKIFTGHQD GKIRVWKVSS KDSNIFRRIG TMPVFRDYLR NSITPSSYFS FMRKNPTSTS
201: AQGFRHVDAI SCLTLSEDNK LLYSGSWDQT FKVWRISDLR CLESVKAHDD AVNAVVSGFD GLVFSGSADG TVKVWRREDQ AKETKHFFSE TLLKQDCAVT
301: AIAVDQSATL VYCGSSDGTV NFWERDNNMK NGGVLKGHKL AVLCLVAAGS LLFSGSADLG IRVWRRPERG DGRGGDVGGG GGEHVCIAVL KGHAGPVKCM
401: AVERDQESAS GEKRWIVYSG SLDRSVKMWR VSESSPPIED QSSDPFDGPT ELTMAPSFSG KGRE

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.