Factsheet for Bra000611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70872	Canola	nucleus	92.55	93.51
AT5G50120.1	Thale cress	nucleus	82.52	82.73
KRH57017	Soybean	plastid	55.27	54.57
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	56.56	54.19
PGSC0003DMT400062862	Potato	cytosol	53.73	53.05
KRH54449	Soybean	plastid	56.04	51.78
KRH63468	Soybean	plastid	55.01	51.2
KRH03365	Soybean	nucleus, plastid	52.7	50.49
Bra024637.1-P	Field mustard	plastid	51.41	49.02
Bra032795.1-P	Field mustard	cytosol	37.53	47.25
GSMUA_Achr6P36100_001	Banana	cytosol	44.73	44.27
Solyc03g113850.1.1	Tomato	cytosol, plastid	52.7	43.25
Zm00001d017994_P001	Maize	cytosol	37.53	41.01
HORVU7Hr1G039810.1	Barley	plastid	40.36	40.89
Os02t0740900-01	Rice	plastid	42.16	40.29
GSMUA_Achr7P19910_001	Banana	cytosol	45.24	40.0
TraesCS7B01G100800.1	Wheat	cytosol	39.59	39.9
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	39.59	38.6
EES07284	Sorghum	cytosol	43.19	38.53
Bra012504.1-P	Field mustard	cytosol, mitochondrion	40.1	37.32
Bra015611.1-P	Field mustard	cytosol	34.7	37.19
Bra037545.1-P	Field mustard	cytosol	35.22	36.83
Bra010967.1-P	Field mustard	cytosol, plastid	39.59	36.49
TraesCS7D01G196700.1	Wheat	cytosol	41.39	32.39
Bra033466.1-P	Field mustard	cytosol, plastid	35.22	32.31
TraesCS7A01G195200.1	Wheat	cytosol	41.13	32.13
Bra006883.1-P	Field mustard	plastid	34.96	32.08
Bra007751.1-P	Field mustard	nucleus	36.76	31.78
Bra034310.1-P	Field mustard	nucleus	36.5	31.63
Bra001728.1-P	Field mustard	nucleus	35.73	30.28
Bra022372.1-P	Field mustard	cytosol	35.48	30.13
Bra012903.1-P	Field mustard	cytosol	35.22	29.53
Bra014189.1-P	Field mustard	nucleus	35.22	29.34
Bra036080.1-P	Field mustard	cytosol	34.19	28.85
Bra017646.1-P	Field mustard	cytosol	35.73	28.43
Bra034622.1-P	Field mustard	cytosol	34.96	27.81
Bra011525.1-P	Field mustard	cytosol	33.93	27.56

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra000611	EnsemblPlants:Bra000611.1	EnsemblPlants:Bra000611.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4C8T3	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF322	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254019C	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT5G50120 (E=3e-168) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:-:12037504..12038673

Molecular Weight (calculated)

42676.4 Da

IEP (calculated)

6.755

GRAVY (calculated)

-0.296

Length

389 amino acids

Sequence
(BLAST)

001: MIRCHETQED GDWSHEDHQI SISQALHQCI ATLVGHTSSY ISSLTLAGKR LYTGSSDGLV RLWDATSLET LAEASSNGDV ITGERGDGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EAEASNKKYM HIATMPTMSD RLAKCLMPNN QVQIRRHKKA SWVHHVDAVS GLALSRDGAL LYSVSWDRTL KIWRTTDFKC
201: LESITNAHDD AINAVELSEN GDIYTGSSDR KIKVWRKKNL DEEKKKKKKH YLVATLSEQD SGINALALSS YNLLYSGGSD GSILVWERDH EGGDIGVAGG
301: LRGHTESVLC LAVVSDIVCS GSADKTVRLW KSSLADYSCL AVLEGHRGPV KCLTGAIRDS GTQSEASYHI YSGGLDSQVK VWEILVPTL

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.